View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0734_low_8 (Length: 397)
Name: NF0734_low_8
Description: NF0734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0734_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 77 - 390
Target Start/End: Original strand, 36132257 - 36132570
Alignment:
| Q |
77 |
tgagatgaacctgatccaagaatttgtttaacataagcagcagaaggggattgtttgcctcccaaaacggccaataagtaagcaacgataatcttcattt |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36132257 |
tgagatgaacctgatccaagaatttgtttaagatcagcagcagaaggggattggttgcctcccaaaacggccaataagtaagcaacgataatcttcattt |
36132356 |
T |
|
| Q |
177 |
ctgatttcagcaaaatcaacaaacaacaatggttnnnnnnncgaattaagaacacataaacgtgaaagtatgaattttctgtgaagaaatcgataactta |
276 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36132357 |
ctgatttcaacaaaatcaacaaacaacaatggttagaaaaacgaattaagaacacataaacgtgaaagtatgaattttctgtgaagaaatcgataactta |
36132456 |
T |
|
| Q |
277 |
cttgatggaaatggcagattggatctcgactcgacggtaggttttcaccagagggatgttgcaagccgcagaaaatgtatcacaagctttatataagaag |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
36132457 |
cttgatggaaatggcagattggatctcgactcgacggtaaggtttcagcagagggatgttgcaagccgcataaaatgtatcacgagctttatataagaag |
36132556 |
T |
|
| Q |
377 |
agcaacagctaggg |
390 |
Q |
| |
|
||||| | |||||| |
|
|
| T |
36132557 |
agcaagaactaggg |
36132570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 81 - 395
Target Start/End: Original strand, 36125739 - 36126053
Alignment:
| Q |
81 |
atgaacctgatccaagaatttgtttaacataagcagcagaaggggattgtttgcctcccaaaacggccaataagtaagcaacgataatcttcatttctga |
180 |
Q |
| |
|
|||||||||||||||||||||| || | || || ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
36125739 |
atgaacctgatccaagaatttgctttagatcagaagcagaaggggattggttgcctcccaaaacggccaacaagtaagcagcgataatcttcatttctga |
36125838 |
T |
|
| Q |
181 |
tttcagcaaaatcaacaaacaacaatggttnnnnnnncgaattaagaacacataaacgtgaaagtatgaattttctgtgaagaaatcgataacttacttg |
280 |
Q |
| |
|
||||| ||||||||||||||||||| ||| ||||||||||||||| | | |||||||| |||| || ||| ||||||||||||||| ||||| |
|
|
| T |
36125839 |
tttcaacaaaatcaacaaacaacaacagttagaaacacgaattaagaacacagagaggtgaaagtctgaacattttgtaaagaaatcgataactcacttg |
36125938 |
T |
|
| Q |
281 |
atggaaatggcagattggatctcgactcgacggtaggttttcaccagagggatgttgcaagccgcagaaaatgtatcacaagctttatataagaagagca |
380 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |
|
|
| T |
36125939 |
atggaaatggcggattggatctcgactcgacggtagggtttcagcagagggatgttgcaagccgcagaaaatgtatcaggagcattatataagaagagta |
36126038 |
T |
|
| Q |
381 |
acagctagggctttg |
395 |
Q |
| |
|
| | |||||| |||| |
|
|
| T |
36126039 |
agaactagggttttg |
36126053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2779 times since January 2019
Visitors: 4801