View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0735_high_10 (Length: 418)
Name: NF0735_high_10
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 21657997 - 21658385
Alignment:
| Q |
7 |
aaacccaccaggccgaaacaaaagctgtatactactacgtacaatgatttctttcgaactaaaactaaactaaaccctccagaaatctgttaatcaat-a |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | |
|
|
| T |
21657997 |
aaacccaccaggccgaaacaaaagctgtatactactacgtacaatgatttctttcgaact-----------aaaccctccataaatctgttaatcaatca |
21658085 |
T |
|
| Q |
106 |
atactaatataatataatagtgtattatctctatcaattgatgcatatatttgaacaatttttctaattcctactatctaaaaggggtaagattcatttt |
205 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21658086 |
ataata--ctaatataatagtgtattatctctatcaattgatgcataaatttgaacaatttttctaattcctactatctaaaaggggtaagattcatttt |
21658183 |
T |
|
| Q |
206 |
taacataagggaaggagatcaagatatttattcctcaacaacagcatcattgtccttaaagacattatttaaagttgtcacagtcttgtcttttaagaca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21658184 |
taacataagggaaggagatcaagatatttattcctcaacaacagcatcattgtcgttaaagacattatttaaagttgtcacagtcttgtcttttaagaca |
21658283 |
T |
|
| Q |
306 |
tacaatgaaatgatgaatttacttccaacatcatggtagttgcccttcaccatttttcattcccattttcataaatcataaaaccccattttcaacattc |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21658284 |
tacaatgaaatgatgaatttacttccaacatcatgctagttgcccttcaccatttttcattcccattttcataaatcataaaaccccattttcaacattc |
21658383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 291
Target Start/End: Original strand, 21663057 - 21663166
Alignment:
| Q |
180 |
tatctaaaaggggtaagattcatttttaacataagggaaggagatcaagatatttattcctcaacaacagcatcattgtccttaaagacattatttaaag |
279 |
Q |
| |
|
||||||||| ||||| ||| ||||||| |||||||| ||||||||||||| |||||||| |||||||| || ||||| |||||||||||||| |||| |
|
|
| T |
21663057 |
tatctaaaaagggtaggatccatttttgacataagg--aggagatcaagatctttattccacaacaacattatttttgtcgttaaagacattattcaaag |
21663154 |
T |
|
| Q |
280 |
ttgtcacagtct |
291 |
Q |
| |
|
|||||||||| |
|
|
| T |
21663155 |
cagtcacagtct |
21663166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 291
Target Start/End: Original strand, 21671821 - 21671930
Alignment:
| Q |
180 |
tatctaaaaggggtaagattcatttttaacataagggaaggagatcaagatatttattcctcaacaacagcatcattgtccttaaagacattatttaaag |
279 |
Q |
| |
|
||||||||| ||||| ||| ||||||| |||||||| ||||||||||||| |||||||| |||||||| || ||||| |||||||||||||| |||| |
|
|
| T |
21671821 |
tatctaaaaagggtaggatccatttttgacataagg--aggagatcaagatctttattccacaacaacattatttttgtcgttaaagacattattcaaag |
21671918 |
T |
|
| Q |
280 |
ttgtcacagtct |
291 |
Q |
| |
|
|||||||||| |
|
|
| T |
21671919 |
cagtcacagtct |
21671930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4543 times since January 2019
Visitors: 4836