View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0735_high_27 (Length: 266)

Name: NF0735_high_27
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0735_high_27
NF0735_high_27
[»] chr4 (20 HSPs)
chr4 (1-144)||(48871113-48871256)
chr4 (1-144)||(48876417-48876560)
chr4 (1-144)||(48886799-48886942)
chr4 (48-134)||(7237125-7237210)
chr4 (48-144)||(48899343-48899436)
chr4 (48-144)||(37826358-37826454)
chr4 (31-109)||(45365620-45365698)
chr4 (48-109)||(45384290-45384351)
chr4 (32-116)||(45371464-45371548)
chr4 (48-132)||(49040535-49040619)
chr4 (31-138)||(50669665-50669772)
chr4 (44-113)||(7790670-7790739)
chr4 (48-144)||(7801237-7801332)
chr4 (52-144)||(48155788-48155880)
chr4 (44-103)||(7771985-7772044)
chr4 (48-115)||(7823569-7823635)
chr4 (48-106)||(48147116-48147174)
chr4 (48-89)||(7908896-7908937)
chr4 (48-97)||(48863859-48863908)
chr4 (92-144)||(50673454-50673506)
[»] chr5 (3 HSPs)
chr5 (48-144)||(9120363-9120462)
chr5 (83-138)||(29696874-29696929)
chr5 (35-138)||(29688713-29688816)
[»] chr8 (2 HSPs)
chr8 (48-144)||(4030153-4030249)
chr8 (31-138)||(15349472-15349576)
[»] chr2 (1 HSPs)
chr2 (52-144)||(29351026-29351118)
[»] chr1 (2 HSPs)
chr1 (31-113)||(24340994-24341076)
chr1 (31-113)||(24353359-24353441)


Alignment Details
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 48871113 - 48871256
Alignment:
Q  1 ctaaatggaatgttacatgggatggatccatggctatgtttatagaatctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaa 100  Q
    ||||||||||||||||||||||||||||| ||||||| | || ||| ||| |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  48871113 ctaaatggaatgttacatgggatggatccgtggctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaa 48871212  T
Q  101 caagaagaatgaggttttgaattattctccttcaccatattctt 144  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  48871213 caagaagaatgaggttttgaattattctccttcaccattttctt 48871256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 48876417 - 48876560
Alignment:
Q  1 ctaaatggaatgttacatgggatggatccatggctatgtttatagaatctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaa 100  Q
    ||||||||||||||||||||||||||||| ||||||| | || ||| ||| |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  48876417 ctaaatggaatgttacatgggatggatccgtggctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaa 48876516  T
Q  101 caagaagaatgaggttttgaattattctccttcaccatattctt 144  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  48876517 caagaagaatgaggttttgaattattctccttcaccattttctt 48876560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 48886799 - 48886942
Alignment:
Q  1 ctaaatggaatgttacatgggatggatccatggctatgtttatagaatctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaa 100  Q
    ||||||||||||||||||||||||||||| ||||||| | || ||| ||| |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  48886799 ctaaatggaatgttacatgggatggatccgtggctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaa 48886898  T
Q  101 caagaagaatgaggttttgaattattctccttcaccatattctt 144  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  48886899 caagaagaatgaggttttgaattattctccttcaccattttctt 48886942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 7237210 - 7237125
Alignment:
Q  48 tctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttca 134  Q
    |||||||||||||||| | ||||||||||||| |||||| ||| ||||||||||||||| ||||| ||| |||| ||||||||||||    
T  7237210 tctctgctttcactccttggtgacaatgagcatgcttaa-aagatgacacaaacaagaacaatgatgttgtgaaatattctccttca 7237125  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 48899343 - 48899436
Alignment:
Q  48 tctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccatattctt 144  Q
    ||||||||||||||   | |||||||| ||||||| || |||| ||||| |||||||||||| ||||||||||| |||||||||| ||||| |||||    
T  48899343 tctctgctttcact---tggtgacaattagcaggcataggaagatgacataaacaagaagaaggaggttttgaaatattctcctttaccattttctt 48899436  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 37826454 - 37826358
Alignment:
Q  48 tctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccatattctt 144  Q
    |||||||||||| |||||  ||||   ||||| | |||||||| ||| ||||||||||||||||||||||  || |||||||||||||||| |||||    
T  37826454 tctctgctttcattccctgttgacggagagcaagtttaagaagatgatacaaacaagaagaatgaggtttcaaaatattctccttcaccattttctt 37826358  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 45365698 - 45365620
Alignment:
Q  31 tggctatgtttatagaatctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaa 109  Q
    |||| |||| || ||| ||| |||| ||||| ||| ||||||||||||| |||||||||| ||||||||||||||||||    
T  45365698 tggccatgtatacagagtctttgctgtcacttcctggtgacaatgagcaagcttaagaagatgacacaaacaagaagaa 45365620  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 45384351 - 45384290
Alignment:
Q  48 tctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaa 109  Q
    ||||| ||||||||  || ||||||||||||| |||||||||| ||||||||||||||||||    
T  45384351 tctctcctttcactttctggtgacaatgagcaagcttaagaagatgacacaaacaagaagaa 45384290  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 45371548 - 45371464
Alignment:
Q  32 ggctatgtttatagaatctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgaggtt 116  Q
    |||||||| || ||| ||||||||||||||| || | |||||||| || |||||||||| || |||| |||||| ||||||||||    
T  45371548 ggctatgtatacagagtctctgctttcactctctagcgacaatgatcaagcttaagaagatggcacagacaagatgaatgaggtt 45371464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 49040619 - 49040535
Alignment:
Q  48 tctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgaggttttgaattattctcctt 132  Q
    |||||||||||||||||   ||||| | |||| |||||||||| || |||||||||||||||||||||  | || ||||||||||    
T  49040619 tctctgctttcactccccaatgacagttagcaagcttaagaagatggcacaaacaagaagaatgaggtagtcaaatattctcctt 49040535  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 50669665 - 50669772
Alignment:
Q  31 tggctatgtttatagaatctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgaggttttgaattattctcc 130  Q
    ||||||||| || ||| ||||| |||||||||||   || | |||| || | | || ||| ||||||||||||||||||  |||||||||| ||||||||    
T  50669665 tggctatgtatacagagtctctactttcactccccgctgtccatgaacaagttcaaaaagatgacacaaacaagaagaacaaggttttgaaatattctcc 50669764  T
Q  131 ttcaccat 138  Q
    ||||||||    
T  50669765 ttcaccat 50669772  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 7790670 - 7790739
Alignment:
Q  44 agaatctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgag 113  Q
    |||||||||||||||||| | | ||||||||||||| | |||||||| || ||||||||| || ||||||    
T  7790670 agaatctctgctttcactacttggtgacaatgagcatgattaagaagatgtcacaaacaaaaacaatgag 7790739  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 7801237 - 7801332
Alignment:
Q  48 tctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccatattctt 144  Q
    |||||||||||||||||| | ||||||||| | | |||||||| ||||| ||||||||| ||||||||  |||| |||  || |||||||| |||||    
T  7801237 tctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa-aatgaggtactgaaatatcatcattcaccattttctt 7801332  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 48155880 - 48155788
Alignment:
Q  52 tgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccatattctt 144  Q
    |||||||||||||| ||||||||| ||| || |||||||    ||||||||||||||||||||| || || || | |||||||| || |||||    
T  48155880 tgctttcactccctggtgacaatgtgcaagcctaagaagacatcacaaacaagaagaatgaggtattaaaatactatccttcacaattttctt 48155788  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 7771985 - 7772044
Alignment:
Q  44 agaatctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaa 103  Q
    |||||||||||||||||| | | ||||||||||||| | |||||||| || |||||||||    
T  7771985 agaatctctgctttcactacttggtgacaatgagcatgattaagaagatgtcacaaacaa 7772044  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 7823569 - 7823635
Alignment:
Q  48 tctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgaggt 115  Q
    |||||||||||||||||| | ||||||||| | | |||||||| ||||| ||||||||| ||||||||    
T  7823569 tctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa-aatgaggt 7823635  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 48147174 - 48147116
Alignment:
Q  48 tctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaa 106  Q
    |||||||||||||||||| ||||||||| ||   | ||||||| |||||||||||||||    
T  48147174 tctctgctttcactccctagtgacaatgtgctaccctaagaagatgacacaaacaagaa 48147116  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 7908896 - 7908937
Alignment:
Q  48 tctctgctttcactccctcgtgacaatgagcaggcttaagaa 89  Q
    |||||||||||||||||| ||||||||||||| | |||||||    
T  7908896 tctctgctttcactccctggtgacaatgagcaagtttaagaa 7908937  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 48863859 - 48863908
Alignment:
Q  48 tctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacac 97  Q
    ||||||||||||||||||  ||||| |||||| |||||||||| ||||||    
T  48863859 tctctgctttcactccctaatgacagtgagcaagcttaagaagatgacac 48863908  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 50673454 - 50673506
Alignment:
Q  92 tgacacaaacaagaagaatgaggttttgaattattctccttcaccatattctt 144  Q
    |||| |||||| ||||||||||||||| || |||| ||||||||||| |||||    
T  50673454 tgactcaaacatgaagaatgaggttttaaaatattttccttcaccattttctt 50673506  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 9120363 - 9120462
Alignment:
Q  48 tctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaac---aagaagaatgaggttttgaattattctccttcaccatattctt 144  Q
    |||||||||||||||||| |||||||||| || ||||||| || ||||||||||   |||||||||||||||||||| |||||||||||||||| |||||    
T  9120363 tctctgctttcactccctggtgacaatgaacaagcttaaggagatgacacaaacaagaagaagaatgaggttttgaaatattctccttcaccattttctt 9120462  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 29696874 - 29696929
Alignment:
Q  83 ttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccat 138  Q
    |||||||| ||||| || ||||||||||||||||||||| |||||| |||||||||    
T  29696874 ttaagaagatgacagaaccaagaagaatgaggttttgaagtattcttcttcaccat 29696929  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 29688713 - 29688816
Alignment:
Q  35 tatgtttatagaatctctgctttcactccctcgtg---acaatgagcaggcttaagaaggtgacacaaacaagaagaatgaggttttgaattattctcct 131  Q
    ||||| || |||||||||||||||||| ||| |||   ||| ||| ||||||||||||| |||| || ||||||   |||||||||| || ||||| |||    
T  29688713 tatgtatacagaatctctgctttcacttcctggtggtgacagtgatcaggcttaagaagatgacgcagacaaga---atgaggttttcaagtattcccct 29688809  T
Q  132 tcaccat 138  Q
    |||||||    
T  29688810 tcaccat 29688816  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 4030249 - 4030153
Alignment:
Q  48 tctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccatattctt 144  Q
    |||||||||||||||||| || |||||||||| |||||||||| |||| ||||||||||||||||| ||||||| |||| || ||||| || |||||    
T  4030249 tctctgctttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgagtttttgaagtattatctttcactattttctt 4030153  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 15349472 - 15349576
Alignment:
Q  31 tggctatgtttatagaatctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgaggttttgaattattctcc 130  Q
    ||||||||| || ||| |||||||||||||||||| |||| ||||||||||||||||| |  ||| |||||   |||||||||||||| | |||||||||    
T  15349472 tggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaac---aagaatgaggttttcagttattctcc 15349568  T
Q  131 ttcaccat 138  Q
    ||||||||    
T  15349569 ttcaccat 15349576  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 29351026 - 29351118
Alignment:
Q  52 tgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccatattctt 144  Q
    |||||||||||||  ||||||||||||| |||||||||| |||| |||||||||||||||||||| |||| |||| || ||||| || |||||    
T  29351026 tgctttcactccccggtgacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttgtgaaatattatctttcactattttctt 29351118  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 24340994 - 24341076
Alignment:
Q  31 tggctatgtttatagaatctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgag 113  Q
    ||||||||| ||  || ||| |||||||||||||| ||||||||||| | |||||||||| || |||||||||||||||||||    
T  24340994 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaagaatgag 24341076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 24353359 - 24353441
Alignment:
Q  31 tggctatgtttatagaatctctgctttcactccctcgtgacaatgagcaggcttaagaaggtgacacaaacaagaagaatgag 113  Q
    ||||||||| ||  || ||| |||||||||||||| ||||||||||| | |||||||||| || |||||||||||||||||||    
T  24353359 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaagaatgag 24353441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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