View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0735_high_53 (Length: 204)
Name: NF0735_high_53
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_high_53 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 47579628 - 47579695
Alignment:
| Q |
114 |
caattatgtcagctgttcaagctagcagatacagttcatatacagatccttatgaggttcatgtgtac |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47579628 |
caattatgtcagctgttcaagctagcagatacagttcatatacagatccttatgaggttcatgtgtac |
47579695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 8683338 - 8683382
Alignment:
| Q |
127 |
tgttcaagctagcagatacagttcatatacagatccttatgaggt |
171 |
Q |
| |
|
|||||| ||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
8683338 |
tgttcaggctagcagatataatgcatatacagatccttatgaggt |
8683382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5276 times since January 2019
Visitors: 4847