View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0735_high_56 (Length: 201)
Name: NF0735_high_56
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_high_56 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 39554008 - 39553836
Alignment:
| Q |
19 |
tgatgcctattctgcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39554008 |
tgatgcctattctgcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcga |
39553909 |
T |
|
| Q |
119 |
cggtcacttctgaccccacgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39553908 |
cggtcacttctgaccccacgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
39553836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 26 - 191
Target Start/End: Complemental strand, 39543982 - 39543817
Alignment:
| Q |
26 |
tattctgcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcac |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
39543982 |
tattctgcaaacatgttccttgtatcatgggccgagatagctcgacccaacaataacaagtctttgatcccaacaatgcaaccttgttttagacggtcac |
39543883 |
T |
|
| Q |
126 |
ttctgaccccacgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
191 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39543882 |
ttatgaccccacgacgcccaccttccatacatccttcactttatgacatgtatgtccccatctctg |
39543817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 39587114 - 39586948
Alignment:
| Q |
23 |
gcctattctgcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggt |
122 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| || | | ||||||||||||||||||||||||| ||||||||||||| | ||| |
|
|
| T |
39587114 |
gcctattctgcaaacatgtttcttgtatcatgggccgagatagcccgatcgagcaataacaagtctttgatcccaacaacacaaccttgttttcaaaggt |
39587015 |
T |
|
| Q |
123 |
cacttctgaccccacgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctc |
189 |
Q |
| |
|
| |||||||||||| ||| |||||||||||||||||||||| | ||||||||||| |||||||||| |
|
|
| T |
39587014 |
cccttctgaccccaagacacccaccttccatccatccttcactctatgacatgtacatccccatctc |
39586948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5767 times since January 2019
Visitors: 4859