View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0735_high_7 (Length: 450)
Name: NF0735_high_7
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_high_7 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 6e-81; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 106 - 322
Target Start/End: Original strand, 24358275 - 24358491
Alignment:
| Q |
106 |
tatctaatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaagtcaatggtgaaatttggtttgaaaagggttggaaact |
205 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| || |||||||||||||||||||||||| |
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| T |
24358275 |
tatcaaatccagtgttgataaagcctcctgatggcactaaatggaaagtttattggaaaaaaatcaatggcgagatttggtttgaaaagggttggaaata |
24358374 |
T |
|
| Q |
206 |
ttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtacacatatttgaccggaatgcagta |
305 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||| ||||||||||||| |
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|
| T |
24358375 |
ttttactgaaaattactctcttggacatggctctttggttgtgtttgaatataaaagaacttccaagtttgatgtacacatttttggccggaatgcagta |
24358474 |
T |
|
| Q |
306 |
gaaatagattattcttc |
322 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
24358475 |
gaaatagattattcttc |
24358491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 103 - 313
Target Start/End: Original strand, 24344338 - 24344548
Alignment:
| Q |
103 |
gtctatctaatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaagtcaatggtgaaatttggtttgaaaagggttggaa |
202 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||| || ||||||| ||||||||||||||||||||||| |
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| T |
24344338 |
gtctatcaaatccagtgttgatcaagcctccagatggcactaaatggaaagtttattggaaaaaaatcgatggtgagatttggtttgaaaagggttggaa |
24344437 |
T |
|
| Q |
203 |
actttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtacacatatttgaccggaatgca |
302 |
Q |
| |
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| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||| ||| ||||||||| |
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| T |
24344438 |
atattttactgaaaattactctcttggacatggctctttggtggtgtttgaatataaaggaacttcgaaatttgatgtagtaatacttggtcggaatgca |
24344537 |
T |
|
| Q |
303 |
gtagaaataga |
313 |
Q |
| |
|
||||||||||| |
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|
| T |
24344538 |
gtagaaataga |
24344548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 75 - 322
Target Start/End: Original strand, 24313752 - 24313994
Alignment:
| Q |
75 |
tttactaggagacatggagttggtctatgtctatctaatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaag-tcaat |
173 |
Q |
| |
|
||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | || ||||||||| ||||| |
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| T |
24313752 |
tttacaaggagacatggagttggtctat------caaatccagtgttgataaagcctcctgatggcactaaatggaaagtgtattggaaaaaaaatcaat |
24313845 |
T |
|
| Q |
174 |
ggtgaaatttggtttgaaaagggttggaaactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttccatgt |
273 |
Q |
| |
|
||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||| | |||||| |||| ||||| ||||||||| | || |
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|
| T |
24313846 |
ggtgagatttggtttgaaaggggttggaaattttttactgaaaattactctcttggacatgggtgtttggtaatgttcaaatataaaggaacttcaaagt |
24313945 |
T |
|
| Q |
274 |
ttgatgtacacatatttgaccggaatgcagtagaaatagattattcttc |
322 |
Q |
| |
|
||||||||| |||| |||||| ||||||| ||||||||||||||||||| |
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|
| T |
24313946 |
ttgatgtactcatacttgaccagaatgcactagaaatagattattcttc |
24313994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 71 - 317
Target Start/End: Complemental strand, 24365048 - 24364808
Alignment:
| Q |
71 |
taagtttactaggagacatggagttggtctatgtctatctaatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaagtc |
170 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||| |||| ||||||||| || |
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|
| T |
24365048 |
taagtttactaggaaacatggagttggtctat------ctaatccagtgttgatcaagcttcctgatggcactggatggaaagtttattggaaaaaaatc |
24364955 |
T |
|
| Q |
171 |
aatggtgaaatttggtttgaaaagggttggaaactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttcca |
270 |
Q |
| |
|
||||| || || ||||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||| ||||||||||| ||||||||||| |
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|
| T |
24364954 |
aatggcgagatgtggtttgaaaagggttggaaaacttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttcca |
24364855 |
T |
|
| Q |
271 |
tgtttgatgtacacatatttgaccggaatgcagtagaaatagattat |
317 |
Q |
| |
|
|||||||||| ||| ||| || |||||||||||||||||||||| |
|
|
| T |
24364854 |
agtttgatgtagtaatacttggccagaatgcagtagaaatagattat |
24364808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 71 - 313
Target Start/End: Original strand, 24354584 - 24354820
Alignment:
| Q |
71 |
taagtttactaggagacatggagttggtctatgtctatctaatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaagtc |
170 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||| || |
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|
| T |
24354584 |
taagtttacaaggaaacatggagttggtctat------caaatccagtgttgatcaagcctccagatggcactaaatggaaagtttattggaaaaaaatc |
24354677 |
T |
|
| Q |
171 |
aatggtgaaatttggtttgaaaagggttggaaactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttcca |
270 |
Q |
| |
|
||||| || |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||| ||||| |||| ||| | |
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|
| T |
24354678 |
aatggagagatttggtttgaaaagggttggaaatattttattgaaaattactctcttggacatggttgtttggtggtgttcaaatataaaggagattcaa |
24354777 |
T |
|
| Q |
271 |
tgtttgatgtacacatatttgaccggaatgcagtagaaataga |
313 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||||||| |
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|
| T |
24354778 |
agtttgatgtacacatacttggccagaatgcagtagaaataga |
24354820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 69 - 281
Target Start/End: Original strand, 24369597 - 24369803
Alignment:
| Q |
69 |
agtaagtttactaggagacatggagttggtctatgtctatctaatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaag |
168 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| | ||||||||| |||||||| ||||||||| ||||||||||||| |||| ||||||||| |
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|
| T |
24369597 |
agtaagtttacaaagagacatggagttggtctat------caaatccagtggtgataaagactcctgatgacactaaatggaaagtttattggaaaaaaa |
24369690 |
T |
|
| Q |
169 |
tcaatggtgaaatttggtttgaaaagggttggaaactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttc |
268 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
24369691 |
tcaatggtgagatttggtttgaaaagggttggaaaacttttactgaaaattactctcttggacatggttgcttggtggtgtttgaatataaaggaacttt |
24369790 |
T |
|
| Q |
269 |
catgtttgatgta |
281 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
24369791 |
caagtttgatgta |
24369803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 111 - 282
Target Start/End: Original strand, 24351533 - 24351704
Alignment:
| Q |
111 |
aatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaagtcaatggtgaaatttggtttgaaaagggttggaaacttttta |
210 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
24351533 |
aatccagtgttgatcaaggctcctgatggcactaaatggaaagtttactggaaaaaaatcaatggtgagatttggtttgaaaagggttggaaacatttta |
24351632 |
T |
|
| Q |
211 |
cagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtac |
282 |
Q |
| |
|
| |||||||||||||| |||||| | ||||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
24351633 |
ctgaaaattactctctacaacatggatgtttggtggtgtttaaatataaaggaacttccaagtttgatgtac |
24351704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 73 - 313
Target Start/End: Original strand, 24361939 - 24362176
Alignment:
| Q |
73 |
agtttactaggagacatggagttggtctatgtctatctaatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaagtcaa |
172 |
Q |
| |
|
||||||| |||||||||||||||||||| | | |||||||||||||| |||||||||||||| |||||||||||| |||| ||||||||| |||| |
|
|
| T |
24361939 |
agtttacaaggagacatggagttggtctgt------caaatccagtgttgatcaagcctcctgatggaactaaatggaaagtttattggaaaaaaatcaa |
24362032 |
T |
|
| Q |
173 |
tggtgaaatttggtttgaaaagggttggaaactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatat---ggaggaacttcc |
269 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| | ||||||| ||||| | ||| | ||||||||| |
|
|
| T |
24362033 |
tggtgagatttggttcgaaaagggttggaaaacttttactgaaaattactctcttggacatgggtttttggtgttgtttaattatgaagaaggaacttct |
24362132 |
T |
|
| Q |
270 |
atgtttgatgtacacatatttgaccggaatgcagtagaaataga |
313 |
Q |
| |
|
| ||| |||||||||| ||| | |||||||||||||||||| |
|
|
| T |
24362133 |
aagttccttgtacacatacttggcaagaatgcagtagaaataga |
24362176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 436
Target Start/End: Complemental strand, 24364727 - 24364689
Alignment:
| Q |
398 |
atggcttaatcggaagaaggctagacaaagatcgccttt |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24364727 |
atggcttaatcggaagaaggctagacaaagatcaccttt |
24364689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 436
Target Start/End: Original strand, 24369920 - 24369958
Alignment:
| Q |
398 |
atggcttaatcggaagaaggctagacaaagatcgccttt |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24369920 |
atggcttaatcggaagaaggctagacaaagatcaccttt |
24369958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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