View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_1 (Length: 616)
Name: NF0735_low_1
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 30 - 608
Target Start/End: Original strand, 342492 - 343070
Alignment:
| Q |
30 |
atattgtgcttgattattaagtttacattaggttactctacctactagatcagaaagcaaaaaattgaaactacaacatttgcattagtgttttaacttg |
129 |
Q |
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| T |
342492 |
atattgtgcttgattattaagtttacattaggttactctacctactagatcagaaagcaaaaaattgaaactacaacatttgcattagtgttttaacttg |
342591 |
T |
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| Q |
130 |
ttggattggactattgatgttgtaaatgttatagaaacctaaaatcaaggaaatgtcaaataggaaggataccgttgagagcttattgagagtgccgtca |
229 |
Q |
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| T |
342592 |
ttggattggactattgatgttgtaaatgttatagaaagctaaaatcaaggaaatgtaaaataggaaggataccgttgagagcttattgagagtgccgtca |
342691 |
T |
|
| Q |
230 |
atctgaacaaagtaagcttccaagagcatctcaagctcctcaacatcaagcttagtggtggtgacactgtaagtagtacttgcacgtgttccgcggctat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
342692 |
atctgaacaaagtaagcttccaagagcatctcaagctcctcaacatcaagcttagtggtggtgacactgtaagtagtacttgcacgtgttccgcggctat |
342791 |
T |
|
| Q |
330 |
cccttaaattcgaagcaccaaacatttgctctctagaattgagattatcctcatcttcctccacataattcacaccccctcctacacccgcttccaacaa |
429 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
342792 |
cccttaaatttgaagcaccaaacatttgctctctagaattgagattatcctcatcttcctccacataattcaccccccctcctacacccgcttccaacga |
342891 |
T |
|
| Q |
430 |
aatctcagcagccggtacactttgattaatatcaacaccattatcatcaacatcatgatcaggagtttcaacagtgtcttcatcagaggtttgttccaat |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
342892 |
aatctcagcagccggtacactttgattaatatcaacaccattatcatcaacatcatgatcaggagtttcaacagtgtcttcatcagaggtttgttccaat |
342991 |
T |
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| Q |
530 |
tgctgttgaagtaacttctcagtaagatacatctccgccatatcttcatcatcatcaagtaaatgttccaattcatctc |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
342992 |
tgctgttgaagtaacttctcagtaagatacatctccgccatatcttcatcatcatcaagtaaatgttccaattcatctc |
343070 |
T |
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