View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_12 (Length: 422)
Name: NF0735_low_12
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 310
Target Start/End: Complemental strand, 11631102 - 11630822
Alignment:
| Q |
30 |
atttacatatagggaaataatgggatttgaaaatgaaatatattggaagaattatatatattaatgatcaaatttacacaaaggtgaaataaaacctaca |
129 |
Q |
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| T |
11631102 |
atttacacatagggaaataatgggatttgaaaatgaaatatattggaagaattatatatattaatgatcaaatttacacaaaggtgaaataaaatctaca |
11631003 |
T |
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| Q |
130 |
cctttattttgagtgctgacatatatacatgaaacaagtcagctcagtttgttaatatacaatatacacaacttattctatatacttttgttataattca |
229 |
Q |
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| T |
11631002 |
cctttattttgagtgctgacatatatacatgaaacaagtcagctcagtttgttaatatacaatatacacaacttattctatatatttttgttataattcc |
11630903 |
T |
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| Q |
230 |
ctaatttaatgctacaccttccactgatttcggcattcatggcttctcctgactgtgccagatcggggagaacaatctctg |
310 |
Q |
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| T |
11630902 |
ctaatttaatgctacaccttccactgattccggcactcatggcttctcctgactgtgccagatcggggagaacaatctctg |
11630822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 64 - 311
Target Start/End: Complemental strand, 11653385 - 11653138
Alignment:
| Q |
64 |
gaaatatattggaagaattatatatattaatgatcaaatttacacaaaggtgaaataaaacctacacctttattttgagtgctgacatatatacatgaaa |
163 |
Q |
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| T |
11653385 |
gaaatatactggaagaataatatatattgatggtcaaatataaacaaaggtgaattaaaacctacacctttatctgtagtgctgacatatatacatgaaa |
11653286 |
T |
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| Q |
164 |
caagtcagctcagtttgttaatatacaatatacacaacttattctatatacttttgttataattcactaatttaatgctacaccttccactgatttcggc |
263 |
Q |
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| T |
11653285 |
tatgtcatctcagtttgttaatatacaatatacataacttgttatacacatttttcttataagtctataatttaaagctacaccttccactgattccggc |
11653186 |
T |
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| Q |
264 |
attcatggcttctcctgactgtgccagatcggggagaacaatctctgc |
311 |
Q |
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| T |
11653185 |
tttcatggcttcgcctgagtgtgccagatcggggagaacaatctctgc |
11653138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 13253732 - 13253913
Alignment:
| Q |
26 |
atcaatttacatatagggaaataatgggatttgaaaatgaaatatattggaagaattatatatattaatgatcaaatttaca-caaaggtgaaataaaac |
124 |
Q |
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| T |
13253732 |
atcattttaaatatagggaaataatggaatttggttatgaaatatattggaagaataatatgtgttgatgatcaaatttaaaacaaaggtgaattaaaac |
13253831 |
T |
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| Q |
125 |
ctacacctttattttgagtgctgacatatatacatgaaacaagtcagctcagtttgttaatatacaatatacacaacttatt |
206 |
Q |
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| T |
13253832 |
ctacacctttctttggagtgctgacacatatacatgaaacaagtcagctcagtttgttaatatataatatacacaacttatt |
13253913 |
T |
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