View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0735_low_16 (Length: 412)

Name: NF0735_low_16
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0735_low_16
NF0735_low_16
[»] chr3 (38 HSPs)
chr3 (21-251)||(6095323-6095555)
chr3 (84-242)||(54593928-54594086)
chr3 (84-246)||(43403530-43403690)
chr3 (292-406)||(6102341-6102455)
chr3 (83-246)||(43401586-43401747)
chr3 (110-248)||(47304473-47304607)
chr3 (84-246)||(49199254-49199415)
chr3 (134-246)||(46860692-46860804)
chr3 (112-248)||(31340042-31340174)
chr3 (83-246)||(55301757-55301922)
chr3 (108-248)||(30236341-30236483)
chr3 (134-246)||(41819363-41819472)
chr3 (134-246)||(36019066-36019178)
chr3 (132-243)||(46173579-46173688)
chr3 (134-246)||(5433786-5433894)
chr3 (21-83)||(44163029-44163091)
chr3 (21-83)||(44189149-44189211)
chr3 (87-167)||(34491480-34491557)
chr3 (83-167)||(40913566-40913647)
chr3 (84-142)||(29196189-29196244)
chr3 (84-142)||(761158-761211)
chr3 (110-142)||(9635946-9635978)
chr3 (110-142)||(22834829-22834861)
chr3 (110-142)||(29682670-29682702)
chr3 (110-142)||(29813375-29813407)
chr3 (110-142)||(39153187-39153219)
chr3 (110-142)||(40734811-40734843)
chr3 (112-142)||(7762580-7762610)
chr3 (82-142)||(9666268-9666324)
chr3 (122-168)||(53666073-53666119)
chr3 (110-139)||(5236279-5236308)
chr3 (83-142)||(9581597-9581653)
chr3 (110-139)||(23391735-23391764)
chr3 (122-167)||(31005368-31005413)
chr3 (110-142)||(5257966-5257998)
chr3 (110-142)||(19683710-19683742)
chr3 (110-142)||(31314754-31314786)
chr3 (110-142)||(40735696-40735728)
[»] chr1 (33 HSPs)
chr1 (84-242)||(11348922-11349080)
chr1 (115-246)||(29136465-29136596)
chr1 (108-246)||(37876576-37876717)
chr1 (292-406)||(51945856-51945970)
chr1 (84-246)||(13548792-13548951)
chr1 (108-246)||(37032879-37033019)
chr1 (108-246)||(47255153-47255287)
chr1 (137-246)||(31925553-31925657)
chr1 (109-246)||(42297790-42297922)
chr1 (137-248)||(37168513-37168622)
chr1 (133-248)||(34603778-34603894)
chr1 (134-248)||(7482064-7482183)
chr1 (134-239)||(28242529-28242635)
chr1 (134-239)||(47115397-47115502)
chr1 (136-235)||(194750-194845)
chr1 (83-246)||(13546885-13547040)
chr1 (108-157)||(19754772-19754821)
chr1 (84-167)||(19752952-19753032)
chr1 (83-142)||(833969-834024)
chr1 (110-142)||(8550606-8550638)
chr1 (110-142)||(20762982-20763014)
chr1 (110-142)||(49918664-49918696)
chr1 (83-139)||(37503361-37503413)
chr1 (82-142)||(45644156-45644212)
chr1 (109-142)||(196731-196764)
chr1 (135-168)||(6398927-6398960)
chr1 (110-139)||(28265381-28265410)
chr1 (110-142)||(13137803-13137835)
chr1 (110-138)||(28220049-28220077)
chr1 (114-142)||(28223248-28223276)
chr1 (110-142)||(40122023-40122055)
chr1 (110-142)||(50167002-50167034)
chr1 (110-142)||(50169037-50169069)
[»] chr6 (22 HSPs)
chr6 (84-242)||(26829909-26830067)
chr6 (84-246)||(17758242-17758402)
chr6 (83-246)||(17763209-17763370)
chr6 (84-248)||(21589146-21589308)
chr6 (84-247)||(5043844-5044006)
chr6 (110-246)||(3808518-3808654)
chr6 (134-246)||(26800805-26800917)
chr6 (137-246)||(2972777-2972887)
chr6 (108-224)||(22424636-22424752)
chr6 (110-159)||(602926-602975)
chr6 (82-142)||(26954089-26954145)
chr6 (110-142)||(5408892-5408924)
chr6 (110-142)||(5413217-5413249)
chr6 (216-251)||(603005-603040)
chr6 (82-142)||(2171324-2171381)
chr6 (110-140)||(22963531-22963561)
chr6 (110-140)||(23824832-23824862)
chr6 (110-139)||(5406025-5406054)
chr6 (110-139)||(5410350-5410379)
chr6 (114-142)||(9182857-9182885)
chr6 (110-142)||(28137233-28137265)
chr6 (114-142)||(33160177-33160205)
[»] chr7 (36 HSPs)
chr7 (84-243)||(4510339-4510496)
chr7 (84-243)||(4512181-4512338)
chr7 (126-246)||(34310544-34310665)
chr7 (108-246)||(4508518-4508657)
chr7 (109-248)||(2360794-2360929)
chr7 (136-248)||(3259210-3259322)
chr7 (109-243)||(6359767-6359897)
chr7 (134-243)||(2390506-2390615)
chr7 (84-248)||(32357848-32358007)
chr7 (134-246)||(8359157-8359266)
chr7 (84-195)||(22270217-22270321)
chr7 (84-195)||(30814666-30814770)
chr7 (134-239)||(29608961-29609060)
chr7 (134-248)||(48599175-48599287)
chr7 (110-151)||(6430432-6430473)
chr7 (82-142)||(38671023-38671079)
chr7 (110-142)||(4179087-4179119)
chr7 (110-142)||(14069656-14069688)
chr7 (110-142)||(14379684-14379716)
chr7 (110-142)||(23555355-23555387)
chr7 (110-142)||(29991367-29991399)
chr7 (110-142)||(41648836-41648868)
chr7 (110-142)||(47675959-47675991)
chr7 (132-166)||(22552451-22552485)
chr7 (110-139)||(18126963-18126992)
chr7 (110-139)||(43864561-43864590)
chr7 (110-142)||(1113966-1113998)
chr7 (172-239)||(1360048-1360116)
chr7 (110-142)||(19502492-19502524)
chr7 (110-142)||(25616169-25616201)
chr7 (110-142)||(31732791-31732823)
chr7 (110-142)||(35854230-35854262)
chr7 (84-142)||(36146212-36146266)
chr7 (110-142)||(41317261-41317293)
chr7 (110-138)||(47673767-47673795)
chr7 (110-142)||(48489745-48489777)
[»] chr4 (34 HSPs)
chr4 (84-246)||(2209936-2210096)
chr4 (82-246)||(40632662-40632827)
chr4 (83-242)||(50673637-50673793)
chr4 (134-246)||(379598-379710)
chr4 (83-246)||(41639643-41639802)
chr4 (82-239)||(21688470-21688622)
chr4 (134-246)||(41964631-41964743)
chr4 (133-248)||(35662656-35662767)
chr4 (84-242)||(50262487-50262643)
chr4 (134-246)||(46703766-46703879)
chr4 (135-248)||(55085286-55085394)
chr4 (84-167)||(6656222-6656305)
chr4 (133-246)||(12073610-12073721)
chr4 (134-206)||(54881561-54881629)
chr4 (137-248)||(8648354-8648473)
chr4 (140-230)||(33990079-33990164)
chr4 (83-142)||(48143362-48143418)
chr4 (137-248)||(8665623-8665734)
chr4 (134-248)||(26364452-26364566)
chr4 (83-142)||(48893442-48893497)
chr4 (110-142)||(26175459-26175491)
chr4 (110-142)||(29999651-29999683)
chr4 (110-142)||(56178458-56178490)
chr4 (110-141)||(37740940-37740971)
chr4 (82-142)||(29254806-29254863)
chr4 (133-167)||(41961691-41961725)
chr4 (110-139)||(5369904-5369933)
chr4 (110-139)||(12739376-12739405)
chr4 (110-142)||(12743751-12743783)
chr4 (110-142)||(34570236-34570268)
chr4 (110-142)||(45687009-45687041)
chr4 (110-142)||(46147218-46147250)
chr4 (110-138)||(47038238-47038266)
chr4 (110-142)||(52467180-52467212)
[»] chr5 (27 HSPs)
chr5 (84-238)||(40751202-40751351)
chr5 (84-234)||(40763211-40763356)
chr5 (129-239)||(213693-213803)
chr5 (134-248)||(27637454-27637565)
chr5 (84-242)||(5058267-5058423)
chr5 (84-251)||(27015734-27015896)
chr5 (84-159)||(38747281-38747353)
chr5 (108-195)||(28278560-28278643)
chr5 (110-166)||(40147531-40147587)
chr5 (110-142)||(3075572-3075604)
chr5 (110-142)||(30682745-30682777)
chr5 (110-142)||(42428253-42428285)
chr5 (111-142)||(36073866-36073897)
chr5 (112-142)||(39468373-39468403)
chr5 (83-139)||(13488517-13488570)
chr5 (110-139)||(32637140-32637169)
chr5 (110-142)||(534072-534104)
chr5 (110-142)||(538334-538366)
chr5 (110-142)||(5887257-5887289)
chr5 (110-142)||(16409793-16409825)
chr5 (114-142)||(16649661-16649689)
chr5 (110-142)||(25413074-25413106)
chr5 (110-142)||(28750478-28750510)
chr5 (110-142)||(30182902-30182934)
chr5 (110-142)||(31183287-31183319)
chr5 (84-142)||(33831992-33832046)
chr5 (110-142)||(42426058-42426090)
[»] chr8 (26 HSPs)
chr8 (128-242)||(18655624-18655738)
chr8 (84-246)||(11384202-11384366)
chr8 (137-246)||(40328993-40329102)
chr8 (84-242)||(42434779-42434937)
chr8 (175-246)||(4283741-4283812)
chr8 (134-246)||(3772409-3772521)
chr8 (312-401)||(3272562-3272651)
chr8 (110-142)||(3303493-3303525)
chr8 (83-142)||(4743026-4743082)
chr8 (110-142)||(5689581-5689613)
chr8 (110-142)||(15213100-15213132)
chr8 (110-142)||(17982967-17982999)
chr8 (110-142)||(30143654-30143686)
chr8 (110-142)||(41366440-41366472)
chr8 (171-246)||(10240342-10240417)
chr8 (111-142)||(34254154-34254185)
chr8 (111-142)||(34256330-34256361)
chr8 (216-246)||(40221962-40221992)
chr8 (84-142)||(31218571-31218625)
chr8 (110-142)||(4731972-4732004)
chr8 (110-142)||(6599279-6599311)
chr8 (110-142)||(6674732-6674764)
chr8 (110-142)||(12702453-12702485)
chr8 (110-142)||(19945181-19945213)
chr8 (110-142)||(42498509-42498541)
chr8 (110-142)||(44304169-44304201)
[»] chr2 (28 HSPs)
chr2 (108-246)||(45727144-45727285)
chr2 (138-248)||(42287953-42288063)
chr2 (83-242)||(1631520-1631681)
chr2 (139-246)||(17450794-17450898)
chr2 (134-246)||(7451336-7451448)
chr2 (83-251)||(35446676-35446840)
chr2 (21-83)||(32719293-32719355)
chr2 (312-401)||(1846841-1846930)
chr2 (134-238)||(33648398-33648497)
chr2 (83-142)||(29868182-29868238)
chr2 (83-142)||(42362659-42362714)
chr2 (110-142)||(723569-723601)
chr2 (110-142)||(5723078-5723110)
chr2 (110-142)||(6594826-6594858)
chr2 (110-142)||(11690801-11690833)
chr2 (110-142)||(34139595-34139627)
chr2 (110-142)||(36773872-36773904)
chr2 (110-142)||(36987897-36987929)
chr2 (82-142)||(24885899-24885955)
chr2 (82-142)||(33162252-33162308)
chr2 (137-195)||(24398349-24398403)
chr2 (110-142)||(2334240-2334272)
chr2 (114-142)||(11151422-11151450)
chr2 (110-142)||(14633650-14633682)
chr2 (318-362)||(21792649-21792693)
chr2 (120-168)||(24198177-24198225)
chr2 (21-57)||(32728278-32728314)
chr2 (110-142)||(36205487-36205519)
[»] scaffold0176 (1 HSPs)
scaffold0176 (84-246)||(17793-17953)
[»] scaffold0466 (1 HSPs)
scaffold0466 (84-246)||(7544-7703)
[»] scaffold0236 (1 HSPs)
scaffold0236 (133-239)||(10714-10820)
[»] scaffold0927 (1 HSPs)
scaffold0927 (135-186)||(3431-3482)
[»] scaffold0286 (1 HSPs)
scaffold0286 (82-142)||(11880-11937)
[»] scaffold1668 (1 HSPs)
scaffold1668 (110-142)||(1324-1356)
[»] scaffold0066 (1 HSPs)
scaffold0066 (114-142)||(20241-20269)
[»] scaffold0002 (1 HSPs)
scaffold0002 (110-142)||(434848-434880)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 6095323 - 6095555
Alignment:
Q  21 cacctttatcaagctaa----aaagaaaattctcttagaacattaccataaaaacaatcaaagagagtgttgtgaattcgggactcaaatttttcacacc 116  Q
    |||||||||||||||||    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  6095323 cacctttatcaagctaattaaaaagaaaattctctaagaacattaccataaaaacaatcaaagagagtgttgtgaattcgggactcaaattt--cacacc 6095420  T
Q  117 aatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaacc 216  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6095421 aatacaaactatgatgtgtggagcaagtatcaatggcaaccaataatcaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaacg 6095520  T
Q  217 aagtgcatagcaaaaccacaatccaaccaaggcat 251  Q
    ||||| |||||||||||||||||||||||||||||    
T  6095521 aagtgtatagcaaaaccacaatccaaccaaggcat 6095555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 84 - 242
Target Start/End: Complemental strand, 54594086 - 54593928
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccaca 181  Q
    |||||||||||||||||||||||||  ||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  54594086 tgttgtgaattcgggactcaaattt--cacaccaatacaaactatatgatatgtagagcaagtatcaatgacaaccaataaccaaatataaataaccaca 54593989  T
Q  182 agcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaa 242  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  54593988 agcaataacaagaatatagacatagtctataaaccatgtgcatagcaaaaccacaatccaa 54593928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 84 - 246
Target Start/End: Original strand, 43403530 - 43403690
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaag 183  Q
    |||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43403530 tgttgtgaattccggactaaaattt--cacaccaatacaaactatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaccacaag 43403627  T
Q  184 caataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    |||||| |||||| |||| ||| |||| ||| |||||||||||||||||||||||| ||||||    
T  43403628 caataataacaatctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaa 43403690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 292 - 406
Target Start/End: Complemental strand, 6102455 - 6102341
Alignment:
Q  292 ttaagttaaactcttactatcttctccctttcttctccgaccatctcgtggccgccctccgcctcagcacctccgaacttaaaatcttcatctgatagtg 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6102455 ttaagttaaactcttactatcttctccctttcttctccgaccatctcgtggccgccctccgcctcagcacctccgaacttaaaatcttcatctgatagtg 6102356  T
Q  392 tctcctctctgctcc 406  Q
    |||||||||| ||||    
T  6102355 tctcctctctactcc 6102341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 43401586 - 43401747
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaa 182  Q
    |||||||||||| |||||||||||||  ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43401586 gtgttgtgaatttgggactcaaattt--cacaccaataccaactatgatctgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaccacaa 43401683  T
Q  183 gcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    |||||||||||||| |||| ||| |||| ||| |||||||||||||||| ||||||| ||||||    
T  43401684 gcaataacaacaatctagatctaatctagaaaacaagtgcatagcaaaatcacaatctaaccaa 43401747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 110 - 248
Target Start/End: Complemental strand, 47304607 - 47304473
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtct 209  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||   ||||||||| ||||| ||||||||||||||||    
T  47304607 tcacaacaatacaaactatgatgtgtggagcaagtatcaatgacaaccaacaaccaaa-gtaaat---cacaagcaacaacaataatatagacctagtct 47304512  T
Q  210 ataaaccaagtgcatagcaaaaccacaatccaaccaagg 248  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  47304511 ataaaccaagtgcatagcaaaaccacaatccaactaagg 47304473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 84 - 246
Target Start/End: Original strand, 49199254 - 49199415
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccaca 181  Q
    ||||||||||||||  |||||||||  |||| ||||||||| |||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49199254 tgttgtgaattcggt-ctcaaattt--cacagcaatacaaattatatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaccaca 49199350  T
Q  182 agcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    ||||||||||||||| |||| ||| |||| ||| |||||||||||||||||||||||| ||||||    
T  49199351 agcaataacaacaatctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaa 49199415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 46860804 - 46860692
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  46860804 gtggagcaaatatcaatggcaaccaataaccaaatgtaaataaccacaaacaacaacaacaatatagacctaatctataaaccaagtgcatagcaaaacc 46860705  T
Q  234 acaatccaaccaa 246  Q
    |||||| ||||||    
T  46860704 acaatctaaccaa 46860692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 112 - 248
Target Start/End: Original strand, 31340042 - 31340174
Alignment:
Q  112 acaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctat 211  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||| ||||||| |||||   |||||||||| ||||| ||||||||||||||||||    
T  31340042 acaccaatacaaactataatgtgtggagcatgtatcaatggcaaccaacaaccaaa-gtaaa---ccacaagcaacaacaataatatagacctagtctat 31340137  T
Q  212 aaaccaagtgcatagcaaaaccacaatccaaccaagg 248  Q
    |||||||||||||||||||||||||||||||| ||||    
T  31340138 aaaccaagtgcatagcaaaaccacaatccaactaagg 31340174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 55301757 - 55301922
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaat-aacca 179  Q
    ||||||||||||| ||||||||||||  |||||||||||||| |||  || ||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  55301757 gtgttgtgaattccggactcaaattt--cacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtgaataaacca 55301854  T
Q  180 caagcaataacaacaatatagacctagtcta-taaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    |||||||||| |||||| |||| ||| ||||  ||||||||||||||||||| ||||||| |||||||    
T  55301855 caagcaataaaaacaatctagatctaatctagaaaaccaagtgcatagcaaagccacaattcaaccaa 55301922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 108 - 248
Target Start/End: Complemental strand, 30236483 - 30236341
Alignment:
Q  108 tttcacaccaataca-aactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaat-aaccacaagcaataacaacaatatagaccta 205  Q
    ||||||||||||| | ||| | ||||||||||||||||||||||| ||||||| |||||||  |  || |||||||||||| ||||||||||||||||||    
T  30236483 tttcacaccaataaataacaaagatgtgtggagcaagtatcaatgtcaaccaacaaccaaaaattgattaaccacaagcaacaacaacaatatagaccta 30236384  T
Q  206 gtctataaaccaagtgcatagcaaaaccacaatccaaccaagg 248  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  30236383 gtctataaaccaagtgcataacaaaaacacaatccaaccaagg 30236341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 41819363 - 41819472
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    |||||||||||||||||| ||||||| ||||||| ||||||   ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  41819363 gtggagcaagtatcaatggcaaccaacaaccaaaagtaaat---cacaagcaacaacaacaatatagacctagtccataaaccaagtgcatagcaaaacc 41819459  T
Q  234 acaatccaaccaa 246  Q
    |||||| ||||||    
T  41819460 acaatctaaccaa 41819472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 36019178 - 36019066
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| || |||||| |||| ||| |||| ||| ||||||  || |||||||    
T  36019178 gtggagcaagtatcaatcacaaccaataatcaaatgtaaattaccacaagcaacaataacaatctagatctaatctagaaaacaagtgtttaacaaaacc 36019079  T
Q  234 acaatccaaccaa 246  Q
    |||||| ||||||    
T  36019078 acaatctaaccaa 36019066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 46173688 - 46173579
Alignment:
Q  132 gtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaaca--atatagacctagtctataaaccaagtgcatagcaa 229  Q
    |||||||||||||||||||| ||||||| ||||||| |||   |||||||||||| | ||| |  ||||| ||||| |||||||||||||||||||||||    
T  46173688 gtgtggagcaagtatcaatggcaaccaacaaccaaa-gta---aaccacaagcaacagcaataatatataaacctattctataaaccaagtgcatagcaa 46173593  T
Q  230 aaccacaatccaac 243  Q
    ||||||||||||||    
T  46173592 aaccacaatccaac 46173579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 5433786 - 5433894
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtc-tataaaccaagtgcatagcaaaac 232  Q
    ||||||||||||||||||||||||||||||||     |||||||||||||||| ||||||||| ||| |||| || |||||  ||| || ||||||||||    
T  5433786 gtggagcaagtatcaatgacaaccaataacca-----aaataaccacaagcaacaacaacaatctagtcctaatcatataagtcaaatgtatagcaaaac 5433880  T
Q  233 cacaatccaaccaa 246  Q
    ||||||| ||||||    
T  5433881 cacaatcgaaccaa 5433894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 44163029 - 44163091
Alignment:
Q  21 cacctttatcaagctaaaaagaaaattctcttagaacattaccataaaaacaatcaaagagag 83  Q
    ||||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  44163029 cacctttatcaacttaaaaagaaaattctcttagaacattcgcataaaaacaatcaaagagag 44163091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 44189149 - 44189211
Alignment:
Q  21 cacctttatcaagctaaaaagaaaattctcttagaacattaccataaaaacaatcaaagagag 83  Q
    ||||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  44189149 cacctttatcaacttaaaaagaaaattctcttagaacattcgcataaaaacaatcaaagagag 44189211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 34491557 - 34491480
Alignment:
Q  87 tgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaa 167  Q
    ||||||||||| |||||||||||  ||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||||    
T  34491557 tgtgaattcgg-actcaaatttt--acaccaatacaaactataatgtgtggagcaagtattaatggcaaccaacaaccaaa 34491480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 167
Target Start/End: Complemental strand, 40913647 - 40913566
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaa 167  Q
    ||||||||||||||| ||||||||||  ||||||||||||||| || ||||| |||||||||||||||| | ||||| |||||||    
T  40913647 gtgttgtgaattcgg-actcaaattt--cacaccaatacaaacaataatgtgcggagcaagtatcaatggcgaccaacaaccaaa 40913566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 29196189 - 29196244
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||| |||||||| |  ||||||||||||||||||||||||||||||||    
T  29196189 tgttgtgaattcgg-actcaaatct--cacaccaatacaaactatgatgtgtggagcaa 29196244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 761211 - 761158
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||| ||||||||    ||||||||||||||||||||||||||||||||    
T  761211 tgttgtgaattcgg-actcaaat----cacaccaatacaaactatgatgtgtggagcaa 761158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 9635946 - 9635978
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  9635946 tcacaccaatacaaactatgatgtgtggagcaa 9635978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 22834829 - 22834861
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  22834829 tcacaccaatacaaactatgatgtgtggagcaa 22834861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 29682702 - 29682670
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  29682702 tcacaccaatacaaactatgatgtgtggagcaa 29682670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 29813407 - 29813375
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  29813407 tcacaccaatacaaactatgatgtgtggagcaa 29813375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 39153187 - 39153219
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  39153187 tcacaccaatacaaactatgatgtgtggagcaa 39153219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 40734843 - 40734811
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  40734843 tcacaccaatacaaactatgatgtgtggagcaa 40734811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 142
Target Start/End: Complemental strand, 7762610 - 7762580
Alignment:
Q  112 acaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||    
T  7762610 acaccaatacaaactatgatgtgtggagcaa 7762580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 9666268 - 9666324
Alignment:
Q  82 agtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||| ||||||| |   ||||||||||||||||||||| ||||||||||    
T  9666268 agtgttgtgaattcgg-actcaaaat---cacaccaatacaaactatgatctgtggagcaa 9666324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 53666119 - 53666073
Alignment:
Q  122 aaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaat 168  Q
    ||||| |||||||||||||||| ||||| ||||||||||| ||||||    
T  53666119 aaactttgatgtgtggagcaaggatcaacgacaaccaatagccaaat 53666073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 5236279 - 5236308
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggag 139  Q
    ||||||||||||||||||||||||||||||    
T  5236279 tcacaccaatacaaactatgatgtgtggag 5236308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 9581653 - 9581597
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||| ||||||||| |   |||||||||| ||||||||||||||| |||||    
T  9581653 gtgttgtgaattccggactcaaaat---cacaccaatataaactatgatgtgtgaagcaa 9581597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 23391735 - 23391764
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggag 139  Q
    ||||||||||||||||||||||||||||||    
T  23391735 tcacaccaatacaaactatgatgtgtggag 23391764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 31005413 - 31005368
Alignment:
Q  122 aaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaa 167  Q
    ||||| |||||||||||||||  |||| ||||||||||||||||||    
T  31005413 aaactttgatgtgtggagcaaagatcagtgacaaccaataaccaaa 31005368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 5257966 - 5257998
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||| ||||||||||||||||||||    
T  5257966 tcacaccaatacgaactatgatgtgtggagcaa 5257998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 19683710 - 19683742
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||| ||||||||    
T  19683710 tcacaccaatacaaactatgatgtttggagcaa 19683742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 31314786 - 31314754
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||| ||||||||    
T  31314786 tcacaccaatacaaactatgatgtatggagcaa 31314754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 40735728 - 40735696
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||| |||||||||||||||||    
T  40735728 tcacaccaatacaaattatgatgtgtggagcaa 40735696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 84 - 242
Target Start/End: Complemental strand, 11349080 - 11348922
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccaca 181  Q
    ||||||||||||||||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  11349080 tgttgtgaattcgggactcaaatttt--acaccaatacaaactatatgatgtgtggagcaagtatcaatgacaattaataatcaaatgtaaataaccaca 11348983  T
Q  182 agcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaa 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11348982 agcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaa 11348922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 115 - 246
Target Start/End: Complemental strand, 29136596 - 29136465
Alignment:
Q  115 ccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaa 214  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||    
T  29136596 ccaatacaaactatgatgtgtggagcaagtaccaatgacaaccaataaccaaatataactaaccacaagcaataacaacaaaatagacctagtctataaa 29136497  T
Q  215 ccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    ||||||||||||||||||||||||| ||||||    
T  29136496 ccaagtgcatagcaaaaccacaatctaaccaa 29136465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 37876576 - 37876717
Alignment:
Q  108 tttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataa-ccacaagcaataacaacaatatagacct 204  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  37876576 tttcacaccaatacaaactatatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaaccacaagcaaaaacaacactatagacct 37876675  T
Q  205 agtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  37876676 agtctataaaccaagtgcatagaaaaaccacaattcaaccaa 37876717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 292 - 406
Target Start/End: Original strand, 51945856 - 51945970
Alignment:
Q  292 ttaagttaaactcttactatcttctccctttcttctccgaccatctcgtggccgccctccgcctcagcacctccgaacttaaaatcttcatctgatagtg 391  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51945856 ttaagttaaactcttactatcttctccctttcttctccacccatctcgcggccgccctccgcctcagcacctccgaatttaaaatcttcatctgatagtg 51945955  T
Q  392 tctcctctctgctcc 406  Q
    |||||||||| ||||    
T  51945956 tctcctctctactcc 51945970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 84 - 246
Target Start/End: Original strand, 13548792 - 13548951
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccaca 181  Q
    |||||||||||| | ||||||||||  ||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| |||   |||||||    
T  13548792 tgttgtgaattctgaactcaaattt--cacaccaatacaaactatatgatgtgtggagcaagtatcaatgacaaccaacaaccaaa-gta---aaccaca 13548885  T
Q  182 agcaataacaacaatatagacctagtctataaacc-aagtgcatagcaaaaccacaatccaaccaa 246  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13548886 agcaacaacaataatatagacctagtctataaaccaaagtgcatagcaaaaccacaatccaaccaa 13548951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 37032879 - 37033019
Alignment:
Q  108 tttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagaccta 205  Q
    ||||||| |||||||||||||  |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  37032879 tttcacaacaatacaaactatatgatgtgtggagcaaatatcaatggcaaccaataaccaaatgtaaataaccacaagcaataacaacaatctagatcta 37032978  T
Q  206 gtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
     |||| ||| |||||||||||||||| |||| || ||||||    
T  37032979 atctagaaaacaagtgcatagcaaaatcacactctaaccaa 37033019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 47255153 - 47255287
Alignment:
Q  108 tttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagt 207  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||| |||||   ||| |||||| ||||| ||||||||||||||    
T  47255153 tttcacaccaatataaactatgatgtgtggagcaggtatcaatggcaaccaacaaccaaa-gtaaa---ccataagcaacaacaataatatagacctagt 47255248  T
Q  208 ctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  47255249 ctataaaccaagtgcatagcaaaaccacaatctaaccaa 47255287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 31925553 - 31925657
Alignment:
Q  137 gagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccaca 236  Q
    ||||||||||||||||||||||| ||||||||     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31925553 gagcaagtatcaatgacaaccaacaaccaaat-----taaccacaagcaataacaataatatagacctagtctataaaccaagtgcatagcaaaaccaca 31925647  T
Q  237 atccaaccaa 246  Q
    ||||||||||    
T  31925648 atccaaccaa 31925657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 42297790 - 42297922
Alignment:
Q  109 ttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtc 208  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||     |||||| |||||||||||| |||||| ||| ||||    
T  42297790 ttcacaccaatccaaactatgatgtgtggagaaagtatcaatggcaaccaacaaccaaat-----taaccataagcaataacaataatatataccaagtc 42297884  T
Q  209 tataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  42297885 tataaaccaagtgcatagcaaaatcacaatccaaccaa 42297922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 137 - 248
Target Start/End: Complemental strand, 37168622 - 37168513
Alignment:
Q  137 gagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccaca 236  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||||||| || |||||||||||||||||||||    
T  37168622 gagcaagtatcaatgacaaccaataaccaaatgtaaataacctcaagcaacaacaa-tatatagacctagtctat-aatcaagtgcatagcaaaaccaca 37168525  T
Q  237 atccaaccaagg 248  Q
    ||| ||||||||    
T  37168524 atcaaaccaagg 37168513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 34603894 - 34603778
Alignment:
Q  133 tgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaaca--atatagacctagtctataaaccaagtgcatagcaaa 230  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||  |||| ||  ||||||||||||||||| || |||||||||||||||    
T  34603894 tgtggagcaagtatcaatgacaaccaataatcaaatgtaaataacctcaagcaccaacagcaatatatagacctagtctat-aatcaagtgcatagcaaa 34603796  T
Q  231 accacaatccaaccaagg 248  Q
    ||||||||||||||||||    
T  34603795 accacaatccaaccaagg 34603778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 7482064 - 7482183
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataacca----aatgtaaataaccacaagcaataacaaca--atatagacctagtctataaaccaagtgcatagc 227  Q
    ||||||||||||||||||||||||||||||||    ||||||||||||| ||||||| |||||||  ||||||||||||||||| || ||||||||||||    
T  7482064 gtggagcaagtatcaatgacaaccaataaccaaattaatgtaaataacctcaagcaacaacaacaatatatagacctagtctat-aatcaagtgcatagc 7482162  T
Q  228 aaaaccacaatccaaccaagg 248  Q
    |||||||||||||||||||||    
T  7482163 aaaaccacaatccaaccaagg 7482183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 28242635 - 28242529
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagc-aaaac 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||| | || |||||||||| ||||| |||||    
T  28242635 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataacctcaagcaacaacaacaatctagatctaatttagaaaccaagtgaatagcaaaaac 28242536  T
Q  233 cacaatc 239  Q
    |||||||    
T  28242535 cacaatc 28242529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 47115502 - 47115397
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    |||||||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||| |||| ||| |||| ||| |||||||||| |||||||    
T  47115502 gtggagcaagtatcaatgacaatcaacaatcaaatgtaaataatcacaagcaataacaacaatctagatctaatctagaaaacaagtgcataacaaaacc 47115403  T
Q  234 acaatc 239  Q
    ||||||    
T  47115402 acaatc 47115397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 194845 - 194750
Alignment:
Q  136 ggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccac 235  Q
    |||||||||||||||| ||||||| ||||||| |||||   |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  194845 ggagcaagtatcaatggcaaccaacaaccaaa-gtaaa---ccacaagcaacaacaataatatagacctagtctataaaccaagtgcatatcaaaaccac 194750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 13546885 - 13547040
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatg--atgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccac 180  Q
    |||||||||||||||  ||||||||| ||||  |||||||||||||   |||||||||||||||||||||| ||||||| ||||||| |||   ||||||    
T  13546885 gtgttgtgaattcggt-ctcaaatttctcac--caatacaaactatataatgtgtggagcaagtatcaatggcaaccaacaaccaaa-gta---aaccac 13546977  T
Q  181 aagcaataacaacaatatagacc--tagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    |||||| ||||| ||||||||||  |||| ||||||||||||     |||||||||||||||||||||    
T  13546978 aagcaacaacaataatatagacctatagtttataaaccaagt-----gcaaaaccacaatccaaccaa 13547040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 19754821 - 19754772
Alignment:
Q  108 tttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaacc 157  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19754821 tttcacaccaatagaaactatgatgtgtggagcaagtatcaatgacaacc 19754772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 19753032 - 19752952
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaa 167  Q
    |||||||||||| | ||||||||||  |||||||||||||||||||||||| | |||||||||||||| ||||||| |||||||    
T  19753032 tgttgtgaattcag-actcaaattt--cacaccaatacaaactatgatgtgcgaagcaagtatcaatggcaaccaacaaccaaa 19752952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 833969 - 834024
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||| ||||||| |   ||||||||||||||||||||||||||||||||    
T  833969 gtgttgtgaattcgg-actcaaaat---cacaccaatacaaactatgatgtgtggagcaa 834024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 8550606 - 8550638
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  8550606 tcacaccaatacaaactatgatgtgtggagcaa 8550638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 20763014 - 20762982
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  20763014 tcacaccaatacaaactatgatgtgtggagcaa 20762982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 49918696 - 49918664
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  49918696 tcacaccaatacaaactatgatgtgtggagcaa 49918664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 37503361 - 37503413
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggag 139  Q
    ||||||||||||||| ||||||| |   |||||||||||||||||||||||||||||    
T  37503361 gtgttgtgaattcgg-actcaaaat---cacaccaatacaaactatgatgtgtggag 37503413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 45644156 - 45644212
Alignment:
Q  82 agtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||| ||||||| |   ||||| ||||||||||||||||||||||||||    
T  45644156 agtgttgtgaattcgg-actcaaaat---cacacaaatacaaactatgatgtgtggagcaa 45644212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 196731 - 196764
Alignment:
Q  109 ttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||| |||||||||||||||||    
T  196731 ttcacaccaatacaaattatgatgtgtggagcaa 196764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 6398960 - 6398927
Alignment:
Q  135 tggagcaagtatcaatgacaaccaataaccaaat 168  Q
    ||||||||||||||||| ||||||||||||||||    
T  6398960 tggagcaagtatcaatggcaaccaataaccaaat 6398927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 28265381 - 28265410
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggag 139  Q
    ||||||||||||||||||||||||||||||    
T  28265381 tcacaccaatacaaactatgatgtgtggag 28265410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 13137803 - 13137835
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||| |||||||||||||||||    
T  13137803 tcacaccaatacaaattatgatgtgtggagcaa 13137835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 28220049 - 28220077
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtgga 138  Q
    |||||||||||||||||||||||||||||    
T  28220049 tcacaccaatacaaactatgatgtgtgga 28220077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 28223248 - 28223276
Alignment:
Q  114 accaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||    
T  28223248 accaatacaaactatgatgtgtggagcaa 28223276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 40122023 - 40122055
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||||||||||| |||||||||    
T  40122023 tcacaccaatacaaactatgatgcgtggagcaa 40122055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 50167002 - 50167034
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||| |||||||||||||||||||||||    
T  50167002 tcacaccaaaacaaactatgatgtgtggagcaa 50167034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 50169037 - 50169069
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||||||||||||||| |||||    
T  50169037 tcacaccaatacaaactatgatgtgtgaagcaa 50169069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 84 - 242
Target Start/End: Original strand, 26829909 - 26830067
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccaca 181  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  26829909 tgttgtgaattcggggctcaaattt--cacaccaatacaaactatatgatgtgtggagcaagtatcaatggaaaccaataaccaaatgtaaataaccaca 26830006  T
Q  182 agcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaa 242  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26830007 agcaataacaacaatataaacctagtctataaaccaagtgcatagcaaaaccacaatccaa 26830067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 84 - 246
Target Start/End: Complemental strand, 17758402 - 17758242
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaag 183  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  17758402 tgttgtgaattcgggactcaaattt--cacaccaatacaaactatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaccgcaag 17758305  T
Q  184 caataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    ||||||||||||| |||| ||| |||| ||| |||||||||||||||||||||||| ||||||    
T  17758304 caataacaacaatctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaa 17758242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 83 - 246
Target Start/End: Complemental strand, 17763370 - 17763209
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaa 182  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17763370 gtgttgtgaattcgggactcaaattt--cacaccaatataaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataatcacaa 17763273  T
Q  183 gcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
     ||||||||||||| |||| ||| |||| | | ||||||||||||||||| |||||| ||||||    
T  17763272 acaataacaacaatctagatctaatctagataacaagtgcatagcaaaactacaatctaaccaa 17763209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 84 - 248
Target Start/End: Complemental strand, 21589308 - 21589146
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaag 183  Q
    |||||||||||| ||||||||||||  |||||||||| ||||||||||||||||||||||||||||||  |||||| |||||||      ||||||||||    
T  21589308 tgttgtgaattctggactcaaattt--cacaccaatataaactatgatgtgtggagcaagtatcaatggaaaccaacaaccaaaaaatgttaaccacaag 21589211  T
Q  184 caataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaagg 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21589210 caataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaactaagg 21589146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 84 - 247
Target Start/End: Complemental strand, 5044006 - 5043844
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaag 183  Q
    ||||||||||||  |||| ||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  5044006 tgttgtgaattcctgacttaaattt--cacaccaatacaaactatgatgtgtggagcacgtatcaatgacaaccaataaccaaatgtaaataacctcaag 5043909  T
Q  184 caataacaacaa--tatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaag 247  Q
    ||| ||||||||  |||||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  5043908 caacaacaacaatatatagacctattctat-aatcaagtgcatagcaaaaccacaatccaaccaag 5043844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 110 - 246
Target Start/End: Original strand, 3808518 - 3808654
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtct 209  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||||||| |||| ||| |||    
T  3808518 tcacaccaatacaaactatgatatgtggagcaagtatcaatggcaaccaataatcaaatgtaaataaccaaaagcaatagcaacaatctagatctaatct 3808617  T
Q  210 ataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    | ||| ||| ||||||||||||||| |||| ||||||    
T  3808618 agaaaacaaatgcatagcaaaaccataatctaaccaa 3808654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 26800917 - 26800805
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| ||| ||||||||||||||||||    
T  26800917 gtggagcaagtatcaatggcaaccaataaccaaatgtaaattaccacaagcaataacaacaatctagatctagtctagaaaacaagtgcatagcaaaacc 26800818  T
Q  234 acaatccaaccaa 246  Q
    |||||| ||||||    
T  26800817 acaatctaaccaa 26800805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 2972777 - 2972887
Alignment:
Q  137 gagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatag-caaaaccac 235  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  2972777 gagcaagtatcaatggcaaccaataatcaaatgtaaataaccacaaacaacaacaacaatatagacctagtctataaactaagtgcatagaaaaaaccac 2972876  T
Q  236 aatccaaccaa 246  Q
    |||| ||||||    
T  2972877 aatctaaccaa 2972887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 108 - 224
Target Start/End: Original strand, 22424636 - 22424752
Alignment:
Q  108 tttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagt 207  Q
    |||||||  |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| ||||||||| |||| ||| |    
T  22424636 tttcacattaatacaaactatgatgtgtggagcaagtatcaatggtaaccaataaccaaatgtaaataaccacaaacaacaacaacaatctagatctaat 22424735  T
Q  208 ctataaaccaagtgcat 224  Q
     || |||||||||||||    
T  22424736 atagaaaccaagtgcat 22424752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 602926 - 602975
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaa 159  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  602926 tcacaccaatacaaactatgatgtgtggagcaagtatcaatggcaaccaa 602975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 26954089 - 26954145
Alignment:
Q  82 agtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||| ||||||| |   ||||||||||||||||||||||||||||||||    
T  26954089 agtgttgtgaattcgg-actcaaaat---cacaccaatacaaactatgatgtgtggagcaa 26954145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 5408892 - 5408924
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  5408892 tcacaccaatacaaactatgatgtgtggagcaa 5408924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 5413217 - 5413249
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  5413217 tcacaccaatacaaactatgatgtgtggagcaa 5413249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 603005 - 603040
Alignment:
Q  216 caagtgcatagcaaaaccacaatccaaccaaggcat 251  Q
    ||||||||||| ||||||||||||||||||||||||    
T  603005 caagtgcatagtaaaaccacaatccaaccaaggcat 603040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 2171324 - 2171381
Alignment:
Q  82 agtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||| || |||||| |   ||||||||||| ||||||||||||||||||||    
T  2171324 agtgttgtgaattccggtctcaaagt---cacaccaatacgaactatgatgtgtggagcaa 2171381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 140
Target Start/End: Original strand, 22963531 - 22963561
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagc 140  Q
    |||||||||||||||||||||||||||||||    
T  22963531 tcacaccaatacaaactatgatgtgtggagc 22963561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 140
Target Start/End: Complemental strand, 23824862 - 23824832
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagc 140  Q
    |||||||||||||||||||||||||||||||    
T  23824862 tcacaccaatacaaactatgatgtgtggagc 23824832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 5406025 - 5406054
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggag 139  Q
    ||||||||||||||||||||||||||||||    
T  5406025 tcacaccaatacaaactatgatgtgtggag 5406054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 5410350 - 5410379
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggag 139  Q
    ||||||||||||||||||||||||||||||    
T  5410350 tcacaccaatacaaactatgatgtgtggag 5410379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 9182857 - 9182885
Alignment:
Q  114 accaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||    
T  9182857 accaatacaaactatgatgtgtggagcaa 9182885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 28137233 - 28137265
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||||||||| |||||||||||    
T  28137233 tcacaccaatacaaactatgacgtgtggagcaa 28137265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 33160177 - 33160205
Alignment:
Q  114 accaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||    
T  33160177 accaatacaaactatgatgtgtggagcaa 33160205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 4510339 - 4510496
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaat-aaccacaa 182  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  4510339 tgttgtgaattcgg-actcaaattt--cacaccaatacaaactatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaaccacaa 4510435  T
Q  183 gcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaac 243  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||    
T  4510436 gcaataacaacaatatagacctagtctataaatcaagtgcatagcaaaaacacaattcaac 4510496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 4512181 - 4512338
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaat-aaccacaa 182  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  4512181 tgttgtgaattcgg-actcaaattt--cacaccaatacaaactatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaaccacaa 4512277  T
Q  183 gcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaac 243  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||    
T  4512278 gcaataacaacaatatagacctagtctataaatcaagtgcatagcaaaaacacaattcaac 4512338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 34310544 - 34310665
Alignment:
Q  126 tatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaata-accacaagcaataacaacaatatagacctagtctataaaccaagtgcat 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34310544 tatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaatagaccacaagcaataacaacaatatagacctagtctataaaccaagtgcat 34310643  T
Q  225 agcaaaaccacaatccaaccaa 246  Q
    |||||||||||||| |||||||    
T  34310644 agcaaaaccacaattcaaccaa 34310665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 4508518 - 4508657
Alignment:
Q  108 tttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataa-ccacaagcaataacaacaatatagacctag 206  Q
    ||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  4508518 tttcacaccaatacaaactatgaagtatgaagcaagtatcaatgccaaccaataaccaaatataaataaaccacaagcaataacaacaatatagacctag 4508617  T
Q  207 tctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  4508618 tctataaaccaagtgcatagcaaaaccacaattcaaccaa 4508657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 2360794 - 2360929
Alignment:
Q  109 ttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||   ||||||||| |||| ||||||||||||||||    
T  2360794 ttcacaccaatacaaactatgatgtgtggagcaagtatcaatggcaaccaacaaccaaa-gtaaat---cacaagcaacaacatcaatatagacctagtc 2360889  T
Q  209 tataaaccaagtgcatagcaaaaccacaatccaaccaagg 248  Q
    || |||||||||||||| |||||||||||| |||||||||    
T  2360890 tagaaaccaagtgcatatcaaaaccacaattcaaccaagg 2360929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 136 - 248
Target Start/End: Complemental strand, 3259322 - 3259210
Alignment:
Q  136 ggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccac 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||| || | |||||||||||||||    
T  3259322 ggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacacgggcatagcaaaaccac 3259223  T
Q  236 aatccaaccaagg 248  Q
    |||||||||||||    
T  3259222 aatccaaccaagg 3259210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 6359767 - 6359897
Alignment:
Q  109 ttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtc 208  Q
    |||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||||| |||||   |||||||||| ||||| |||||| ||||||||    
T  6359767 ttcacatcaatacaaactatgatgtgtggagcaagtatcaatgggaaccaacaaccaaa-gtaaa---ccacaagcaacaacaataatatatacctagtc 6359862  T
Q  209 tataaaccaagtgcatagcaaaaccacaatccaac 243  Q
    |||||||||||||||||||||||||||||||||||    
T  6359863 tataaaccaagtgcatagcaaaaccacaatccaac 6359897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 2390615 - 2390506
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| |||| ||| ||| || |||||||||||    
T  2390615 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaatcaataacaacaatctagatctaatctagaaaacaaatgtatagcaaaacc 2390516  T
Q  234 acaatccaac 243  Q
    ||||||||||    
T  2390515 acaatccaac 2390506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 248
Target Start/End: Original strand, 32357848 - 32358007
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccaca 181  Q
    |||||||||||||| || |||||||  |||||||||||||| |||  ||||||||||| ||||||||||||||||||| ||||||| |||||   |||||    
T  32357848 tgttgtgaattcgg-acacaaattt--cacaccaatacaaattatatgatgtgtggagtaagtatcaatgacaaccaacaaccaaa-gtaaa---ccaca 32357940  T
Q  182 agcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaagg 248  Q
    ||||| ||||| |||||||||||||| ||||| |||| |||||| |||||||||||| ||| |||||    
T  32357941 agcaacaacaataatatagacctagtttataatccaattgcataacaaaaccacaattcaagcaagg 32358007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 8359157 - 8359266
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    |||||||||||||||||| ||||||| || |||| ||||||   ||||||||| ||||||||| |||| ||| |||| ||| ||||||||||||||||||    
T  8359157 gtggagcaagtatcaatggcaaccaacaatcaaaagtaaat---cacaagcaacaacaacaatctagatctaatctagaaaacaagtgcatagcaaaacc 8359253  T
Q  234 acaatccaaccaa 246  Q
    |||||| ||||||    
T  8359254 acaatctaaccaa 8359266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 22270321 - 22270217
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaag 183  Q
    |||| ||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||    || ||||||||||    
T  22270321 tgttatgaattcgg-actcaaattt--cacagcaatacaaactatgatgtgtggagcaagtatcaatggcaaccaacaaccaa----aattaaccacaag 22270229  T
Q  184 caataacaacaa 195  Q
    ||| ||||||||    
T  22270228 caacaacaacaa 22270217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 30814770 - 30814666
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaag 183  Q
    |||||||||||||| ||||||||||  ||||||| |||||| |||||||||||||||||||||||||| ||||||| ||||||    || ||||||||||    
T  30814770 tgttgtgaattcgg-actcaaattt--cacaccagtacaaaatatgatgtgtggagcaagtatcaatggcaaccaacaaccaa----aattaaccacaag 30814678  T
Q  184 caataacaacaa 195  Q
    ||| ||||||||    
T  30814677 caacaacaacaa 30814666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 29609060 - 29608961
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagc-aaaac 232  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||| |||| ||| | || |||||||||||||| | |||||    
T  29609060 gtggagcaagtatcaatgacaaccaa-------atgtaaataaccacaagcaacaacaacaatctagatctaatatagaaaccaagtgcatatcaaaaac 29608968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 48599175 - 48599287
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatata--gacctagtctataaaccaagtgcatagcaaaa 231  Q
    ||||||||||||||||||||||||||  |  ||||||   ||||||||| ||| ||||| ||||||  |||||||||||||| | ||||||| |||||||    
T  48599175 gtggagcaagtatcaatgacaaccaaacaaaaaatgt---taaccacaaacaacaacaataatatatagacctagtctataatc-aagtgcacagcaaaa 48599270  T
Q  232 ccacaatccaaccaagg 248  Q
    | |||||||||||||||    
T  48599271 ctacaatccaaccaagg 48599287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 6430473 - 6430432
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaagtatcaatg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6430473 tcacaccaatacaaactatgatgtgtggagcaagtatcaatg 6430432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 38671023 - 38671079
Alignment:
Q  82 agtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||| ||||||| |   ||||||||||||||||||||||||||||||||    
T  38671023 agtgttgtgaattcgg-actcaaaat---cacaccaatacaaactatgatgtgtggagcaa 38671079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 4179119 - 4179087
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  4179119 tcacaccaatacaaactatgatgtgtggagcaa 4179087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 14069656 - 14069688
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  14069656 tcacaccaatacaaactatgatgtgtggagcaa 14069688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 14379684 - 14379716
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  14379684 tcacaccaatacaaactatgatgtgtggagcaa 14379716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 23555387 - 23555355
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  23555387 tcacaccaatacaaactatgatgtgtggagcaa 23555355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 29991399 - 29991367
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  29991399 tcacaccaatacaaactatgatgtgtggagcaa 29991367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 41648836 - 41648868
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  41648836 tcacaccaatacaaactatgatgtgtggagcaa 41648868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 47675959 - 47675991
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  47675959 tcacaccaatacaaactatgatgtgtggagcaa 47675991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 22552451 - 22552485
Alignment:
Q  132 gtgtggagcaagtatcaatgacaaccaataaccaa 166  Q
    ||||||||||||||||||||||||| |||||||||    
T  22552451 gtgtggagcaagtatcaatgacaactaataaccaa 22552485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 18126992 - 18126963
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggag 139  Q
    ||||||||||||||||||||||||||||||    
T  18126992 tcacaccaatacaaactatgatgtgtggag 18126963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 43864590 - 43864561
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggag 139  Q
    ||||||||||||||||||||||||||||||    
T  43864590 tcacaccaatacaaactatgatgtgtggag 43864561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 1113998 - 1113966
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||| |||||||||||||||||||||||||||    
T  1113998 tcacatcaatacaaactatgatgtgtggagcaa 1113966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 1360048 - 1360116
Alignment:
Q  172 aataaccacaagcaataacaacaa-tatagacctagtctataaaccaagtgcatagcaaaaccacaatc 239  Q
    ||||||||||||||| |||||||| | |||| ||| |||| |||| ||||| | |||||||||||||||    
T  1360048 aataaccacaagcaacaacaacaattttagatctaatctaaaaactaagtgtaaagcaaaaccacaatc 1360116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 19502524 - 19502492
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||| ||||||||||||||||||||||||||    
T  19502524 tcacactaatacaaactatgatgtgtggagcaa 19502492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 25616201 - 25616169
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||| ||||||||    
T  25616201 tcacaccaatacaaactatgatgtatggagcaa 25616169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 31732791 - 31732823
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||| ||||||||||||||||||||||||    
T  31732791 tcacaccagtacaaactatgatgtgtggagcaa 31732823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 35854262 - 35854230
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||| ||||||||||||||||||||||||||    
T  35854262 tcacacaaatacaaactatgatgtgtggagcaa 35854230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 36146212 - 36146266
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||| ||||||| ||   |||| ||||||||||||||||||||||||||    
T  36146212 tgttgtgaattcgg-actcaaaatt---acacaaatacaaactatgatgtgtggagcaa 36146266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 41317261 - 41317293
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||| ||||||||    
T  41317261 tcacaccaatacaaactatgatgtttggagcaa 41317293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 47673767 - 47673795
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtgga 138  Q
    |||||||||||||||||||||||||||||    
T  47673767 tcacaccaatacaaactatgatgtgtgga 47673795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 48489777 - 48489745
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||| ||||||||||||||||||||    
T  48489777 tcacaccaataccaactatgatgtgtggagcaa 48489745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 84 - 246
Target Start/End: Complemental strand, 2210096 - 2209936
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaag 183  Q
    |||||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  2210096 tgttgttaattccggactcaaattt--cacaccaatacaaactatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaccacaaa 2209999  T
Q  184 caataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    ||||||||||||| |||| ||| |||| ||| |||||||||||||||||||||||| ||||||    
T  2209998 caataacaacaatctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaa 2209936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 82 - 246
Target Start/End: Complemental strand, 40632827 - 40632662
Alignment:
Q  82 agtgttgtgaattcgggactcaaatttttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataa-cc 178  Q
    |||||||||||||| |||||||||||   ||||||||||||||||||  ||||||| ||||||||||||||| |||||||||||||||||||||||| ||    
T  40632827 agtgttgtgaattccggactcaaatta--cacaccaatacaaactatatgatgtgtagagcaagtatcaatggcaaccaataaccaaatgtaaataaacc 40632730  T
Q  179 acaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  40632729 acaagcaataacaacaatatagacctagtctatataccaagtgcatggcaaaaccacaattcaaccaa 40632662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 50673637 - 50673793
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaa 182  Q
    ||||||||||||| |||||||||||   ||||  |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||    
T  50673637 gtgttgtgaattccggactcaaatta--cacattaatacaaattatgatgtgtggagcaagtatcaatgtcaaccaataaccaaatgtaaatcaccataa 50673734  T
Q  183 gcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaa 242  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||    
T  50673735 gcaataacaacaatatagatctagtctat-aatcaagtgcatagcaaaaccacaatccaa 50673793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 379710 - 379598
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    ||||||||||||||| || |||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  379710 gtggagcaagtatcagtggcaaccaataatcaaatgtaaataaccacaaacaacaacaacaatatagacctagtctataaaccaagtgcataacaaaacc 379611  T
Q  234 acaatccaaccaa 246  Q
    |||||| ||||||    
T  379610 acaatctaaccaa 379598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 83 - 246
Target Start/End: Complemental strand, 41639802 - 41639643
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaa 182  Q
    ||||||||||||| | ||||||||||  |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||    
T  41639802 gtgttgtgaattcag-actcaaattt--cacatcaatacaaactatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgta---aaccacaa 41639709  T
Q  183 gcaataacaa---caatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    |||| |||||     ||||||||||||||||| || ||||||||||||||||||||||| |||||||    
T  41639708 gcaacaacaaatgatatatagacctagtctat-aatcaagtgcatagcaaaaccacaattcaaccaa 41639643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 21688622 - 21688470
Alignment:
Q  82 agtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccaca 181  Q
    |||||||||||||  | |||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |   ||||||||    
T  21688622 agtgttgtgaatttcgaactcaaatttt--acactaatacaaactatgatgtgtggagcaagtatcaatgacaatcaacaactaaatat---taaccaca 21688528  T
Q  182 agcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatc 239  Q
    ||||| ||||| |||||||| |||||||||||| ||| |||||| |||||||||||||    
T  21688527 agcaacaacaataatatagatctagtctataaatcaaatgcataacaaaaccacaatc 21688470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 41964743 - 41964631
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||    
T  41964743 gtggagcaagtatcaatggcaaccaacaatcaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcatagcaaaacc 41964644  T
Q  234 acaatccaaccaa 246  Q
    |||||| ||||||    
T  41964643 acaatctaaccaa 41964631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 35662767 - 35662656
Alignment:
Q  133 tgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaac 232  Q
    ||||||||||||||||||| ||||||| |||||||    | |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  35662767 tgtggagcaagtatcaatggcaaccaacaaccaaa----attaaccataagcaacaacaacaatatagacatagtctataaaccaagtgcatagcaaaac 35662672  T
Q  233 cacaatccaaccaagg 248  Q
    ||||||||||||||||    
T  35662671 cacaatccaaccaagg 35662656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 242
Target Start/End: Original strand, 50262487 - 50262643
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaag 183  Q
    |||||||||||| | ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||   || ||||||||||    
T  50262487 tgttgtgaattcag-actcaaattt--cacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaacaagcaaaaaaaattaaccacaag 50262583  T
Q  184 caataacaaca--atatagacctagtctataaaccaagtgcatagcaaaaccacaatccaa 242  Q
    ||| |||||||  ||||||||||||| | | || ||||||||| |||||||||||||||||    
T  50262584 caacaacaacaatatatagacctagtatgt-aatcaagtgcatggcaaaaccacaatccaa 50262643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 46703879 - 46703766
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaa--tatagacctagtctataaaccaagtgcatagcaaaa 231  Q
    |||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||  |||||||||| ||||| || ||||||||||||||||    
T  46703879 gtggagtaagtatcaataacaaccaataaccaaatgtaaataacctcaagcaacaacaacaatatatagacctattctat-aatcaagtgcatagcaaaa 46703781  T
Q  232 ccacaatccaaccaa 246  Q
    |||||||| ||||||    
T  46703780 ccacaatctaaccaa 46703766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 55085286 - 55085394
Alignment:
Q  135 tggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacca 234  Q
    ||||||||||||||||||||||||| || |||||     |||| |||||||||||||||||| |||| ||| | || |||||||||||||||||||||||    
T  55085286 tggagcaagtatcaatgacaaccaacaatcaaat-----taactacaagcaataacaacaatctagatctaatttagaaaccaagtgcatagcaaaacca 55085380  T
Q  235 caatccaaccaagg 248  Q
    ||||||||||||||    
T  55085381 caatccaaccaagg 55085394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 6656305 - 6656222
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaata--caaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaa 167  Q
    |||||||||||| ||||||||||||  |||| |||||  |||||||||||||||||||||||||||||||||| |||| |||||||    
T  6656305 tgttgtgaattccggactcaaattt--cacatcaataaacaaactatgatgtgtggagcaagtatcaatgacatccaacaaccaaa 6656222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 12073721 - 12073610
Alignment:
Q  133 tgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaac 232  Q
    ||||||||||||||||||| |||  || ||||||  | ||  |||||||||||| ||||||||| |||| ||| |||| |||||||||||||| ||||||    
T  12073721 tgtggagcaagtatcaatggcaataaacaaccaa--ggaataaaccacaagcaacaacaacaatctagatctaatctagaaaccaagtgcataacaaaac 12073624  T
Q  233 cacaatccaaccaa 246  Q
    ||||||| ||||||    
T  12073623 cacaatctaaccaa 12073610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 54881629 - 54881561
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctag 206  Q
    |||||||||||||||||||||||||| |||||||    |  ||||||||||||||||||||||||||||||||    
T  54881629 gtggagcaagtatcaatgacaaccaacaaccaaa----ataaaccacaagcaataacaacaatatagacctag 54881561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 248
Target Start/End: Complemental strand, 8648473 - 8648354
Alignment:
Q  137 gagcaagtatcaatgacaaccaataaccaaatgta---aataaccacaagcaataacaacaatata--gacctagtctata---aaccaagtgcatagca 228  Q
    ||||||||||||||| ||||||| |||||||   |   | ||||||||||||| ||||||||||||  ||||||||||||    || ||| |||||||||    
T  8648473 gagcaagtatcaatggcaaccaacaaccaaaaaaattgattaaccacaagcaacaacaacaatatatagacctagtctatctataatcaaatgcatagca 8648374  T
Q  229 aaaccacaatccaaccaagg 248  Q
    ||||||||||||||||||||    
T  8648373 aaaccacaatccaaccaagg 8648354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 33990164 - 33990079
Alignment:
Q  140 caagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaa 230  Q
    |||||||||||| ||| |||||||||||     |||| ||||||||| ||||||||| |||| ||| |||| |||||||||||||||||||    
T  33990164 caagtatcaatggcaatcaataaccaaa-----ataaacacaagcaacaacaacaatctagatctaatctagaaaccaagtgcatagcaaa 33990079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 48143418 - 48143362
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||| ||||||||| |   ||||||||||||||||||||||||||||||||    
T  48143418 gtgttgtgaattccggactcaaaat---cacaccaatacaaactatgatgtgtggagcaa 48143362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 248
Target Start/End: Complemental strand, 8665734 - 8665623
Alignment:
Q  137 gagcaagtatcaatgacaaccaataaccaaatgta---aataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    ||||||||||||||| ||||||| |||||||   |   | ||||||||||||| ||||||||||||| | || ||||||| | || ||||||||||||||    
T  8665734 gagcaagtatcaatggcaaccaacaaccaaaaaaattgattaaccacaagcaacaacaacaatatagtc-ta-tctataatcaaa-tgcatagcaaaacc 8665638  T
Q  234 acaatccaaccaagg 248  Q
    |||||||||||||||    
T  8665637 acaatccaaccaagg 8665623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 26364566 - 26364452
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaa--tgtaaataaccacaagcaataacaacaatata--gacctagtctataaaccaagtgcatagcaa 229  Q
    |||||||||||||||||||||| ||| ||  |||  |||   |||| |||||||| ||||||||||||  ||||||||||||||   ||||| |||||||    
T  26364566 gtggagcaagtatcaatgacaatcaacaataaaaaatgt---taactacaagcaacaacaacaatatatagacctagtctataatt-aagtgtatagcaa 26364471  T
Q  230 aaccacaatccaaccaagg 248  Q
    ||||||||||||| |||||    
T  26364470 aaccacaatccaagcaagg 26364452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 48893442 - 48893497
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||| ||||||| |   ||||||||||||||||||||||||||||||||    
T  48893442 gtgttgtgaattcgg-actcaaaat---cacaccaatacaaactatgatgtgtggagcaa 48893497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 26175459 - 26175491
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  26175459 tcacaccaatacaaactatgatgtgtggagcaa 26175491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 29999651 - 29999683
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  29999651 tcacaccaatacaaactatgatgtgtggagcaa 29999683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 56178458 - 56178490
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  56178458 tcacaccaatacaaactatgatgtgtggagcaa 56178490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 141
Target Start/End: Complemental strand, 37740971 - 37740940
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagca 141  Q
    ||||||||||||||||||||||||||||||||    
T  37740971 tcacaccaatacaaactatgatgtgtggagca 37740940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 29254863 - 29254806
Alignment:
Q  82 agtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||| ||| ||| |   ||||| ||||||||||||||||||||||||||    
T  29254863 agtgttgtgaattcggaacttaaaat---cacactaatacaaactatgatgtgtggagcaa 29254806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 167
Target Start/End: Complemental strand, 41961725 - 41961691
Alignment:
Q  133 tgtggagcaagtatcaatgacaaccaataaccaaa 167  Q
    ||||| |||||||||||||||||||||||||||||    
T  41961725 tgtggggcaagtatcaatgacaaccaataaccaaa 41961691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 5369904 - 5369933
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggag 139  Q
    ||||||||||||||||||||||||||||||    
T  5369904 tcacaccaatacaaactatgatgtgtggag 5369933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 12739376 - 12739405
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggag 139  Q
    ||||||||||||||||||||||||||||||    
T  12739376 tcacaccaatacaaactatgatgtgtggag 12739405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 12743751 - 12743783
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||| ||||||||||||    
T  12743751 tcacaccaatacaaactatgttgtgtggagcaa 12743783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 34570236 - 34570268
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||| |||||||||||||||||||||    
T  34570236 tcacaccaatataaactatgatgtgtggagcaa 34570268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 45687009 - 45687041
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||| ||||||||    
T  45687009 tcacaccaatacaaactatgatgtatggagcaa 45687041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 46147218 - 46147250
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||| ||||||||||||||||||||||    
T  46147218 tcacaccaatgcaaactatgatgtgtggagcaa 46147250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 47038238 - 47038266
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtgga 138  Q
    |||||||||||||||||||||||||||||    
T  47038238 tcacaccaatacaaactatgatgtgtgga 47038266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 52467180 - 52467212
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||||||||||||||| |||||    
T  52467180 tcacaccaatacaaactatgatgtgtgaagcaa 52467212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 84 - 238
Target Start/End: Complemental strand, 40751351 - 40751202
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaag 183  Q
    |||||||||||| ||||| |||| |  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||   |||||||    
T  40751351 tgttgtgaattccggacttaaatct--cacaccaatacaaactatgatttgtggagtaagtatcaatgacaaccaataaccaaatgtaaa---ccacaag 40751257  T
Q  184 caataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaat 238  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40751256 caataacaacaatatagacctaatctataaaccaagtgcatagcaaaaccacaat 40751202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 84 - 234
Target Start/End: Complemental strand, 40763356 - 40763211
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaag 183  Q
    |||||||||||| ||||| |||| |  |||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||   ||| |||    
T  40763356 tgttgtgaattccggacttaaatct--cacaccaatataaactatgatctgtggagcaagtatcaatgacaaccaataatcaaatgtaaa---ccataag 40763262  T
Q  184 caataacaacaatatagacctagtctataaaccaagtgcatagcaaaacca 234  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40763261 caataacaacaatatagacctaatctataaaccaagtgcatagcaaaacca 40763211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 213803 - 213693
Alignment:
Q  129 gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagca 228  Q
    ||||||| ||||||||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  213803 gatgtgtagagcaagtatcaatagcaatcaataaccaaatgtaaaaaaccacaagcaataacaacaatatagacctagtctattaactaagtgcatagca 213704  T
Q  229 aaaccacaatc 239  Q
    |||||||||||    
T  213703 aaaccacaatc 213693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 27637454 - 27637565
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    ||||||||||||| ||||  || ||| ||||||| ||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27637454 gtggagcaagtattaatggtaatcaacaaccaaaagtaaat---cacaagcaacaacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 27637550  T
Q  234 acaatccaaccaagg 248  Q
    |||||||||| ||||    
T  27637551 acaatccaactaagg 27637565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 84 - 242
Target Start/End: Complemental strand, 5058423 - 5058267
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaa--tgtaaataaccaca 181  Q
    |||||||||||  | ||||||||||  |||||||||| ||| ||||||||||||| |||||||||||| ||||||| |||||||  |||   ||||||||    
T  5058423 tgttgtgaatttcgaactcaaattt--cacaccaatataaattatgatgtgtggaacaagtatcaatggcaaccaacaaccaaaaatgt---taaccaca 5058329  T
Q  182 agcaataacaacaa--tatagacctagtctataaaccaagtgcatagcaaaaccacaatccaa 242  Q
    ||||| ||||||||  |||||||||||||||| || ||||||||||| ||||||| |||||||    
T  5058328 agcaacaacaacaatatatagacctagtctat-aatcaagtgcatagtaaaaccataatccaa 5058267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 251
Target Start/End: Complemental strand, 27015896 - 27015734
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaag 183  Q
    ||||||||||| ||||| |||||||  |||| ||| ||||||||||||| ||||||||||||| |||| ||| ||| ||||||| ||||||   ||||||    
T  27015896 tgttgtgaatttgggacccaaattt--cacagcaaaacaaactatgatgggtggagcaagtattaatggcaatcaacaaccaaa-gtaaat---cacaag 27015803  T
Q  184 caataacaaca--atatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaaggcat 251  Q
    ||| |||||||  ||||| ||||||||||| || |||||||||| |||||||||||| ||||||| ||||    
T  27015802 caacaacaacaatatatatacctagtctat-aatcaagtgcatatcaaaaccacaattcaaccaaagcat 27015734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 38747353 - 38747281
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaa 159  Q
    ||||||||||| || ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38747353 tgttgtgaatttgg-actcaaattt--cacaccaatacaaactatgatgtgtggagcaagtatcaatggcaaccaa 38747281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 28278643 - 28278560
Alignment:
Q  108 tttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaa 195  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||| || |||    || ||||||||||||| ||||||||    
T  28278643 tttcacaccaatacaaaatatgatgtgtggagcaagtatcaatggcaaccaacaaacaa----aattaaccacaagcaacaacaacaa 28278560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 40147587 - 40147531
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaa 166  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||| ||||||    
T  40147587 tcacaccaatacaaactatgatgtgtggagcaagtattaatggaaaccaacaaccaa 40147531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 3075572 - 3075604
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  3075572 tcacaccaatacaaactatgatgtgtggagcaa 3075604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 30682745 - 30682777
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  30682745 tcacaccaatacaaactatgatgtgtggagcaa 30682777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 42428253 - 42428285
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  42428253 tcacaccaatacaaactatgatgtgtggagcaa 42428285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 142
Target Start/End: Original strand, 36073866 - 36073897
Alignment:
Q  111 cacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||||||||||||||||||||    
T  36073866 cacaccaatacaaactatgatgtgtggagcaa 36073897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 142
Target Start/End: Original strand, 39468373 - 39468403
Alignment:
Q  112 acaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||    
T  39468373 acaccaatacaaactatgatgtgtggagcaa 39468403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 13488570 - 13488517
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggag 139  Q
    ||||||||||||||| |||||||| |  |||||||||||||| ||||||||||||||    
T  13488570 gtgttgtgaattcgg-actcaaatct--cacaccaatacaaaatatgatgtgtggag 13488517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 32637169 - 32637140
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggag 139  Q
    ||||||||||||||||||||||||||||||    
T  32637169 tcacaccaatacaaactatgatgtgtggag 32637140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 534104 - 534072
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||| |||||||||||||||||||||    
T  534104 tcacaccaatagaaactatgatgtgtggagcaa 534072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 538366 - 538334
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||| |||||||||||||||||||||    
T  538366 tcacaccaatataaactatgatgtgtggagcaa 538334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 5887257 - 5887289
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||| ||||||||||    
T  5887257 tcacaccaatacaaactatgatatgtggagcaa 5887289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 16409825 - 16409793
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||| |||||||||||||||||    
T  16409825 tcacaccaatacaaagtatgatgtgtggagcaa 16409793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 16649661 - 16649689
Alignment:
Q  114 accaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||    
T  16649661 accaatacaaactatgatgtgtggagcaa 16649689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 25413106 - 25413074
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||| ||||||||||||||||||||    
T  25413106 tcacaccaatacgaactatgatgtgtggagcaa 25413074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 28750478 - 28750510
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||| |||||||||||||||||    
T  28750478 tcacaccaatacaaattatgatgtgtggagcaa 28750510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 30182934 - 30182902
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||| |||||||||||||||||||||||    
T  30182934 tcacaccaaaacaaactatgatgtgtggagcaa 30182902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 31183319 - 31183287
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||| ||||||||||||||||    
T  31183319 tcacaccaatacaaaccatgatgtgtggagcaa 31183287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 33832046 - 33831992
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||| ||||||| ||   |||| ||||||||||||||||||||||||||    
T  33832046 tgttgtgaattcgg-actcaaaatt---acacaaatacaaactatgatgtgtggagcaa 33831992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 42426058 - 42426090
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||| ||||||||||||||||||||||||||    
T  42426058 tcacacaaatacaaactatgatgtgtggagcaa 42426090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 18655738 - 18655624
Alignment:
Q  128 tgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagc 227  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18655738 tgatgtgtggagcaaatatcaatgacaaccaataaccaaatgtaaataaacacaagcaataacaacaatatagatctagtctataaaccaagtgcatagc 18655639  T
Q  228 aaaaccacaatccaa 242  Q
    |||||||||||||||    
T  18655638 aaaaccacaatccaa 18655624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 84 - 246
Target Start/End: Complemental strand, 11384366 - 11384202
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaata--caaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataacca 179  Q
    ||||||||| || ||||||||||||  ||||||||||  |||| |||  ||||||||||| |||||||| |||||| |||||||||||||||||||||||    
T  11384366 tgttgtgaactctggactcaaattt--cacaccaatatacaaattatatgatgtgtggagtaagtatcattgacaagcaataaccaaatgtaaataacca 11384269  T
Q  180 caagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    ||||||||||||||||| |||| ||| |||| ||| |||||||||||||||||||||||| ||||||    
T  11384268 caagcaataacaacaatctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaa 11384202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 40329102 - 40328993
Alignment:
Q  137 gagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccaca 236  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||| |||| ||| |||||||||||||||||||||    
T  40329102 gagcaagtatcaatgacaaccaacaaccaaatgtaaataaccacaagcaataacaacagtctagatctaatctagaaaacaagtgcatagcaaaaccaca 40329003  T
Q  237 atccaaccaa 246  Q
    ||| ||||||    
T  40329002 atctaaccaa 40328993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 84 - 242
Target Start/End: Original strand, 42434779 - 42434937
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaa--tgtaaataacca 179  Q
    ||||||||||| || ||||||||||  ||||||||||||||||||  |||||| |||||||||||||||| ||||||| |||||||  |||   ||||||    
T  42434779 tgttgtgaatttggaactcaaattt--cacaccaatacaaactatatgatgtgaggagcaagtatcaatggcaaccaacaaccaaaaatgt---taacca 42434873  T
Q  180 caagcaataacaacaata--tagacctagtctataaaccaagtgcatagcaaaaccacaatccaa 242  Q
    ||||||| ||||||||||  |||||||||||||||| | ||||||||||||||||||||||||||    
T  42434874 caagcaacaacaacaatagatagacctagtctataatc-aagtgcatagcaaaaccacaatccaa 42434937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 4283812 - 4283741
Alignment:
Q  175 aaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4283812 aaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaattcaaccaa 4283741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 3772521 - 3772409
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    |||||||| ||||||||| |||||||| |||||| | |||||||||||||||| ||||||||| ||||  || |||| ||| ||||||||||||||||||    
T  3772521 gtggagcaggtatcaatggcaaccaatcaccaaaagaaaataaccacaagcaacaacaacaatctagatttaatctagaaatcaagtgcatagcaaaacc 3772422  T
Q  234 acaatccaaccaa 246  Q
    |||||| ||||||    
T  3772421 acaatctaaccaa 3772409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 3272651 - 3272562
Alignment:
Q  312 cttctccctttcttctccgaccatctcgtggccgccctccgcctcagcacctccgaacttaaaatcttcatctgatagtgtctcctctct 401  Q
    ||||| ||||||||| |||||||||| |  || ||||||||||||||||||  || ||||| ||||||||||| | ||||||||||||||    
T  3272651 cttcttcctttcttcaccgaccatctggccgctgccctccgcctcagcaccgtcggacttacaatcttcatctaacagtgtctcctctct 3272562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 3303493 - 3303525
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  3303493 tcacaccaatacaaactatgatgtgtggagcaa 3303525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 4743026 - 4743082
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||| |||||||| |  |||||||||||||||||| |||||||||||||    
T  4743026 gtgttgtgaattcgg-actcaaatct--cacaccaatacaaactataatgtgtggagcaa 4743082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 5689613 - 5689581
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  5689613 tcacaccaatacaaactatgatgtgtggagcaa 5689581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 15213132 - 15213100
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  15213132 tcacaccaatacaaactatgatgtgtggagcaa 15213100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 17982999 - 17982967
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  17982999 tcacaccaatacaaactatgatgtgtggagcaa 17982967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 30143686 - 30143654
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  30143686 tcacaccaatacaaactatgatgtgtggagcaa 30143654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 41366440 - 41366472
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  41366440 tcacaccaatacaaactatgatgtgtggagcaa 41366472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 10240417 - 10240342
Alignment:
Q  171 aaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    ||||| |||||| ||||||||||||| |||| ||| |||| |||| || || | ||||||||||||||| ||||||    
T  10240417 aaatagccacaaacaataacaacaatctagatctaatctagaaacgaaatgtaaagcaaaaccacaatcgaaccaa 10240342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 142
Target Start/End: Original strand, 34254154 - 34254185
Alignment:
Q  111 cacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||||||||||||||||||||    
T  34254154 cacaccaatacaaactatgatgtgtggagcaa 34254185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 142
Target Start/End: Original strand, 34256330 - 34256361
Alignment:
Q  111 cacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||||||||||||||||||||    
T  34256330 cacaccaatacaaactatgatgtgtggagcaa 34256361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 246
Target Start/End: Complemental strand, 40221992 - 40221962
Alignment:
Q  216 caagtgcatagcaaaaccacaatccaaccaa 246  Q
    |||||||||||||||||||||||||||||||    
T  40221992 caagtgcatagcaaaaccacaatccaaccaa 40221962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 31218625 - 31218571
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||| || |||||||    |||||||||| |||||||||||||||||||||    
T  31218625 tgttgtgaattccggtctcaaat----cacaccaatataaactatgatgtgtggagcaa 31218571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 4732004 - 4731972
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||| ||||||||||||||||    
T  4732004 tcacaccaatacaaacaatgatgtgtggagcaa 4731972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 6599311 - 6599279
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||| ||||||    
T  6599311 tcacaccaatacaaactatgatgtgtagagcaa 6599279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 6674764 - 6674732
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||| ||||||    
T  6674764 tcacaccaatacaaactatgatgtgtagagcaa 6674732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 12702453 - 12702485
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||| |||||||||||||||||||||||||||    
T  12702453 tcacatcaatacaaactatgatgtgtggagcaa 12702485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 19945181 - 19945213
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||||| |||||||||||||||    
T  19945181 tcacaccaatacaaactttgatgtgtggagcaa 19945213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 42498541 - 42498509
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||| |||||||||||||||||    
T  42498541 tcacaccaatacaaaatatgatgtgtggagcaa 42498509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 44304201 - 44304169
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||| |||||||||||||||||||    
T  44304201 tcacaccaatacatactatgatgtgtggagcaa 44304169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 108 - 246
Target Start/End: Complemental strand, 45727285 - 45727144
Alignment:
Q  108 tttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataa-ccacaagcaataacaacaatatagacct 204  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  45727285 tttcacaccaatacaaactatatgatgtgtggagcaagtatcaatggcaactaataaccaaatgtaaataaaccacaagcaacaacaataatatagacct 45727186  T
Q  205 agtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  45727185 agtctataaactaagtgcatagcaaaaccacaatccaaccaa 45727144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 138 - 248
Target Start/End: Original strand, 42287953 - 42288063
Alignment:
Q  138 agcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaa 237  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||| ||||||||||    
T  42287953 agcaaatatcaatggcaaccaataaccaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcatagaaaaaccacaa 42288052  T
Q  238 tccaaccaagg 248  Q
    |||||||||||    
T  42288053 tccaaccaagg 42288063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 1631520 - 1631681
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaat-aacca 179  Q
    ||||||||||| ||||| ||||||||  |||| |||||||||||||  ||||||||||| ||||||||||||||||||| |||||||| ||||| |||||    
T  1631520 gtgttgtgaatccgggattcaaattt--cacatcaatacaaactatatgatgtgtggagtaagtatcaatgacaaccaacaaccaaatataaataaacca 1631617  T
Q  180 caagcaataacaaca--atatagacctagtctataaaccaagtgcatagcaaaaccacaatccaa 242  Q
    |||||||||||||||  |||||||| |||||| | || |||||| ||||||||||||||||||||    
T  1631618 caagcaataacaacaatatatagacttagtctgt-aatcaagtgtatagcaaaaccacaatccaa 1631681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 17450898 - 17450794
Alignment:
Q  139 gcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaat 238  Q
    ||||||||||||||||||| ||||||||||||||||   ||||||||| ||||||||| || ||||| |||| |||||||||||||||||||||||||||    
T  17450898 gcaagtatcaatgacaaccgataaccaaatgtaaat---cacaagcaacaacaacaatctaaacctaatctagaaaccaagtgcatagcaaaaccacaat 17450802  T
Q  239 ccaaccaa 246  Q
    | ||||||    
T  17450801 ctaaccaa 17450794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 7451448 - 7451336
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    ||||||||||| |||||||||||||||||||   ||| ||||||||||||||||||||||||| |||| ||| |||| ||| |||||||||| |||||||    
T  7451448 gtggagcaagtttcaatgacaaccaataacctcttgtcaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcataacaaaacc 7451349  T
Q  234 acaatccaaccaa 246  Q
    |||||| ||||||    
T  7451348 acaatcgaaccaa 7451336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 251
Target Start/End: Original strand, 35446676 - 35446840
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccac 180  Q
    ||||||||||||| | ||||||||||  |||| ||||| |||||||  ||||||||||||||||||||||  ||||||| ||||||| |||   ||||||    
T  35446676 gtgttgtgaattctg-actcaaattt--cacatcaatataaactatatgatgtgtggagcaagtatcaatcccaaccaacaaccaaa-gta---aaccac 35446768  T
Q  181 aagcaataacaaca--atatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaaggcat 251  Q
    |  ||| |||||||  ||||||| ||||||||| || ||||||||||||||||||||||| ||||||| ||||    
T  35446769 actcaacaacaacaatatatagatctagtctat-aatcaagtgcatagcaaaaccacaattcaaccaaagcat 35446840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 32719293 - 32719355
Alignment:
Q  21 cacctttatcaagctaaaaagaaaattctcttagaacattaccataaaaacaatcaaagagag 83  Q
    ||||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  32719293 cacctttatcaacttaaaaagaaaattctcttagaacattcgcataaaaacaatcaaagagag 32719355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 1846841 - 1846930
Alignment:
Q  312 cttctccctttcttctccgaccatctcgtggccgccctccgcctcagcacctccgaacttaaaatcttcatctgatagtgtctcctctct 401  Q
    ||||| ||||||||| ||||||||||||  |||||||||||||||||||||  || ||||  ||||||||||| | ||||||||||||||    
T  1846841 cttcttcctttcttcaccgaccatctcgccgccgccctccgcctcagcaccgtcggacttgcaatcttcatctaacagtgtctcctctct 1846930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 33648497 - 33648398
Alignment:
Q  134 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaacc 233  Q
    |||||| ||| ||||||||||||||||||| |     ||||||| || ||||| ||||||||| ||| |||| ||||||| ||||||||||||||||| |    
T  33648497 gtggagtaagaatcaatgacaaccaataacaa-----aaataactacgagcaacaacaacaatctaggcctaatctataagccaagtgcatagcaaaatc 33648403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 29868238 - 29868182
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||    
T  29868238 gtgttgtgaattcgg-actcaaattt--cacagcaatacaaactatgatgtgtggagcaa 29868182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 42362714 - 42362659
Alignment:
Q  83 gtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||| ||||||| |   ||||||||||||||||||||||||||||||||    
T  42362714 gtgttgtgaattcgg-actcaaaat---cacaccaatacaaactatgatgtgtggagcaa 42362659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 723569 - 723601
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  723569 tcacaccaatacaaactatgatgtgtggagcaa 723601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 5723078 - 5723110
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  5723078 tcacaccaatacaaactatgatgtgtggagcaa 5723110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 6594826 - 6594858
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  6594826 tcacaccaatacaaactatgatgtgtggagcaa 6594858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 11690833 - 11690801
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  11690833 tcacaccaatacaaactatgatgtgtggagcaa 11690801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 34139595 - 34139627
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  34139595 tcacaccaatacaaactatgatgtgtggagcaa 34139627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 36773904 - 36773872
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  36773904 tcacaccaatacaaactatgatgtgtggagcaa 36773872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 36987897 - 36987929
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||||||    
T  36987897 tcacaccaatacaaactatgatgtgtggagcaa 36987929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 24885955 - 24885899
Alignment:
Q  82 agtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||| ||||||| |   |||||||||||||||||||||||||| |||||    
T  24885955 agtgttgtgaattcgg-actcaaaat---cacaccaatacaaactatgatgtgtgtagcaa 24885899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 33162252 - 33162308
Alignment:
Q  82 agtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||| ||||||| |   |||| |||||||||||||||||||||||||||    
T  33162252 agtgttgtgaattcgg-actcaaaat---cacatcaatacaaactatgatgtgtggagcaa 33162308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 24398403 - 24398349
Alignment:
Q  137 gagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaa 195  Q
    ||||||||||||||||||||||||||| ||    |||||||||||||||  ||||||||    
T  24398403 gagcaagtatcaatgacaaccaataacaaa----aaataaccacaagcagcaacaacaa 24398349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 2334240 - 2334272
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||||||||||||||| |||||    
T  2334240 tcacaccaatacaaactatgatgtgtgaagcaa 2334272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 11151422 - 11151450
Alignment:
Q  114 accaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||    
T  11151422 accaatacaaactatgatgtgtggagcaa 11151450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 14633650 - 14633682
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    ||||||||||||||||||||||||||| |||||    
T  14633650 tcacaccaatacaaactatgatgtgtgaagcaa 14633682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 21792649 - 21792693
Alignment:
Q  318 cctttcttctccgaccatctcgtggccgccctccgcctcagcacc 362  Q
    ||||||||||| ||||||||||  | |||||||||||||||||||    
T  21792649 cctttcttctctgaccatctcgcagtcgccctccgcctcagcacc 21792693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 24198225 - 24198177
Alignment:
Q  120 acaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaat 168  Q
    |||||||  |||||||||||||||| ||| || ||||||||||||||||    
T  24198225 acaaacttagatgtgtggagcaagtgtcagtggcaaccaataaccaaat 24198177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 32728278 - 32728314
Alignment:
Q  21 cacctttatcaagctaaaaagaaaattctcttagaac 57  Q
    ||||||||||||  |||||||||||||||||||||||    
T  32728278 cacctttatcaacttaaaaagaaaattctcttagaac 32728314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 36205487 - 36205519
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||| ||||||||||||||||||||||||||    
T  36205487 tcacactaatacaaactatgatgtgtggagcaa 36205519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 84 - 246
Target Start/End: Original strand, 17793 - 17953
Alignment:
Q  84 tgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaag 183  Q
    |||| ||||||| ||||||||||||  |||||||||||||||||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||    
T  17793 tgttatgaattctggactcaaattt--cacaccaatacaaactatgatgtgtgtagcaagtatcaatagcaaccaataatcaaatgtaaataaccacaag 17890  T
Q  184 caataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    ||||||||||||| |||| ||| |||| ||| ||| |||||||||||||||||||| ||||||    
T  17891 caataacaacaatctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaa 17953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 84 - 246
Target Start/End: Complemental strand, 7703 - 7544
Alignment:
Q  84 tgttgtgaatt-cgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaa 182  Q
    ||||||||||| ||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||   ||||||||    
T  7703 tgttgtgaatttcggaactcaaattt--cacaccaatacaaactatgatgtgtggagcaagtatcaatggcaaccaacaaccaaa-gta---aaccacaa 7610  T
Q  183 gcaataacaaca--atatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaa 246  Q
    |||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7609 gcaacaacaataatatatagacctagtctataaaccaagtgcatagcaaaaccacaattcaaccaa 7544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 10820 - 10714
Alignment:
Q  133 tgtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaac 232  Q
    ||||||| ||||||||||||||||| ||||||||| | |||||||||||||||| ||||||||| ||||  || |||| ||| |||||| |||| |||||    
T  10820 tgtggagaaagtatcaatgacaaccgataaccaaaagaaaataaccacaagcaacaacaacaatctagatttaatctagaaatcaagtgtatagtaaaac 10721  T
Q  233 cacaatc 239  Q
     ||||||    
T  10720 tacaatc 10714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 3431 - 3482
Alignment:
Q  135 tggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaa 186  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  3431 tggagcaagtatcaatggcaaccaataactaaatgtaaataaccacaagcaa 3482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 11937 - 11880
Alignment:
Q  82 agtgttgtgaattcgggactcaaatttttcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||| || |||||| |   ||||||||||| ||||||||||||||||||||    
T  11937 agtgttgtgaattccggtctcaaagt---cacaccaatacgaactatgatgtgtggagcaa 11880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 1324 - 1356
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||| ||||||||||||||||||    
T  1324 tcacaccaatacaatctatgatgtgtggagcaa 1356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 20241 - 20269
Alignment:
Q  114 accaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||||||||||||||||||||    
T  20241 accaatacaaactatgatgtgtggagcaa 20269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 434880 - 434848
Alignment:
Q  110 tcacaccaatacaaactatgatgtgtggagcaa 142  Q
    |||||||||||| ||||||||||||||||||||    
T  434880 tcacaccaatacgaactatgatgtgtggagcaa 434848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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