View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_17 (Length: 394)
Name: NF0735_low_17
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 39 - 378
Target Start/End: Complemental strand, 2146477 - 2146141
Alignment:
| Q |
39 |
agagacaatactgcggaaccccagaattaggatttctttttaacttccctttccaattaagagaagaaaatcaaattagcaataatcaaagtgatcgatg |
138 |
Q |
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| T |
2146477 |
agagacaatactgcggaaccccagaattaggacttctttttaacttccctttccaattaagagaagaaaatcaaattagcaataatcaaagtgatcgatg |
2146378 |
T |
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| Q |
139 |
tgtgtacccaggctttgaagttgtttgcaaaaataagcaacctttgattacactctcaaatggaagagaatttattgtcaaaaaattttcccatgcaagt |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||| | ||| ||| || |
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| T |
2146377 |
tgtgtacccaggctttgaagttgtttgcaaaaataagcaacctttgattacactctcaaatggaaaagaatatgttatcaaaaatatatcctatgagagc |
2146278 |
T |
|
| Q |
239 |
caaagaatttggttggatgatcctaatggctgttcaccaagacggttccttgaaaacatagacctcaacaatgattcacctttccaatgggacatatttt |
338 |
Q |
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| T |
2146277 |
caaagaatatggatggatgatcccaatgattgtccaccaagaaggttccttcaaaacatagacctcaacgatgattcacttttccaacgggacagacttt |
2146178 |
T |
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| Q |
339 |
atcatagcacccattattatgaaaacgtaacctttctcaa |
378 |
Q |
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| T |
2146177 |
atcatagtac---tcattatgaaaacgtaacatttctcaa |
2146141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 122 - 394
Target Start/End: Complemental strand, 2142269 - 2141996
Alignment:
| Q |
122 |
aatcaaagtgatcgatgtgtgtacccaggctttgaagttgtttgcaaaaataag---caacctttgattacactctcaaatggaagagaatttattgtca |
218 |
Q |
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| T |
2142269 |
aatcaaagtgatcgatgtgggtacccaggatttgaagtttattgcaacaatatgaaccaacctttgattacactctcaaatggaagagaatttattgtca |
2142170 |
T |
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| Q |
219 |
aaaaattttcccatgcaagtcaaagaatttggttggatgatcctaatggctgttcaccaagacggttccttgaaaacatagacctcaacaatgattcacc |
318 |
Q |
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| T |
2142169 |
aaaaattttcccatgcaagtcaaagaatttggttggatgatcctaatggttgttcaccaagacggttccttg--aacatagacctcaacaatgattcacc |
2142072 |
T |
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| Q |
319 |
tttccaatgggacatattttatcatagcacccattattatgaaaacgtaacctttctcaactgttctaccaatttt |
394 |
Q |
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|||||||||||||| |||| ||||||| || |||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
2142071 |
tttccaatgggacagatttgatcatagtactcattattatgaaaacgtaacatttctcaactgtactaccaatttt |
2141996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 2151843 - 2151706
Alignment:
| Q |
83 |
ttccctttccaattaagagaagaaaatcaaattagcaataatcaaagtgatcgatgtgtgtacccaggctttgaagttgtttgcaaaaataagcaacctt |
182 |
Q |
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||||| |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
2151843 |
ttcccattccaattaagaaaagaaaatcaaattaacaatgctcaaagtgatcgatgtgtgtacccaggatttgaagttgtttgcaagaataagcaacctt |
2151744 |
T |
|
| Q |
183 |
tgattacactctcaaatggaagagaatttattgtcaaa |
220 |
Q |
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| T |
2151743 |
tgattacactctcaaatggaagagaatttgttgtcaaa |
2151706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 2142331 - 2142269
Alignment:
| Q |
46 |
atactgcggaaccccagaattaggatttctttttaacttccctttccaattaagagaagaaaa |
108 |
Q |
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|||||||||||||| ||| | |||||| ||||| | ||||||||||||||||||||| |||| |
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| T |
2142331 |
atactgcggaaccctagagtcgggatttttttttcagttccctttccaattaagagaaaaaaa |
2142269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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