View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_19 (Length: 384)
Name: NF0735_low_19
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 170 - 288
Target Start/End: Original strand, 24369920 - 24370039
Alignment:
| Q |
170 |
atggcttaatcggaagaaggctagacaaagatcgcctttcgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttc |
268 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
24369920 |
atggcttaatcggaagaaggctagacaaagatcaccttttgtttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattttcttttc |
24370019 |
T |
|
| Q |
269 |
aagagtttcttcgatgtttt |
288 |
Q |
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|||||||||||||||||||| |
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| T |
24370020 |
aagagtttcttcgatgtttt |
24370039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 24358564 - 24358664
Alignment:
| Q |
170 |
atggcttaatcggaagaaggctagacaaagatcgcctttcgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttc |
268 |
Q |
| |
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|||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
24358564 |
atggcttaattggaagaaggctaaacaaagatcacctttcgtttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattttcttttc |
24358663 |
T |
|
| Q |
269 |
a |
269 |
Q |
| |
|
| |
|
|
| T |
24358664 |
a |
24358664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 170 - 269
Target Start/End: Complemental strand, 24364727 - 24364627
Alignment:
| Q |
170 |
atggcttaatcggaagaaggctagacaaagatcgcctttcgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttc |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24364727 |
atggcttaatcggaagaaggctagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttcttttc |
24364628 |
T |
|
| Q |
269 |
a |
269 |
Q |
| |
|
| |
|
|
| T |
24364627 |
a |
24364627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 24354902 - 24354974
Alignment:
| Q |
170 |
atggcttaatcggaagaaggctagacaaagatcgcctttcgtttctcctcgaccacataagaaagttcgaggt |
242 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
24354902 |
atggcttaatcagaagaatgctagacaaagatcacctttcgtttctcctcgacctcataagaaagttagaggt |
24354974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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