View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0735_low_20 (Length: 372)

Name: NF0735_low_20
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0735_low_20
NF0735_low_20
[»] chr8 (20 HSPs)
chr8 (159-320)||(25609003-25609164)
chr8 (175-267)||(45560319-45560411)
chr8 (171-267)||(25294938-25295034)
chr8 (171-267)||(25756958-25757054)
chr8 (176-264)||(3845250-3845338)
chr8 (175-267)||(11543487-11543578)
chr8 (175-267)||(22312642-22312733)
chr8 (22-94)||(25608866-25608938)
chr8 (172-267)||(20177085-20177181)
chr8 (172-267)||(20221812-20221908)
chr8 (190-263)||(19332722-19332795)
chr8 (173-267)||(7469134-7469229)
chr8 (173-267)||(38636880-38636975)
chr8 (187-267)||(22498490-22498569)
chr8 (179-267)||(24238571-24238659)
chr8 (64-94)||(11543402-11543432)
chr8 (64-94)||(22312557-22312587)
chr8 (65-94)||(17265745-17265774)
chr8 (65-94)||(19332921-19332950)
chr8 (263-320)||(24266889-24266945)
[»] chr3 (17 HSPs)
chr3 (171-267)||(8603590-8603686)
chr3 (171-267)||(5229215-5229311)
chr3 (171-260)||(11401544-11401633)
chr3 (173-267)||(25105176-25105270)
chr3 (263-320)||(17319829-17319886)
chr3 (171-267)||(38376913-38377009)
chr3 (171-264)||(11516703-11516796)
chr3 (196-267)||(17759544-17759615)
chr3 (173-267)||(18968976-18969071)
chr3 (196-267)||(19060864-19060935)
chr3 (197-263)||(37917583-37917649)
chr3 (64-94)||(5229325-5229355)
chr3 (64-94)||(11401463-11401493)
chr3 (197-263)||(40040332-40040398)
chr3 (173-251)||(43428768-43428846)
chr3 (172-264)||(17392312-17392404)
chr3 (64-92)||(38377062-38377090)
[»] chr2 (11 HSPs)
chr2 (171-267)||(24561972-24562068)
chr2 (171-267)||(18534796-18534892)
chr2 (171-267)||(20272328-20272424)
chr2 (179-267)||(22331695-22331783)
chr2 (195-267)||(43641709-43641781)
chr2 (171-263)||(6093802-6093894)
chr2 (207-267)||(45618405-45618465)
chr2 (195-265)||(19434681-19434751)
chr2 (195-267)||(24840793-24840864)
chr2 (171-263)||(29113176-29113268)
chr2 (64-94)||(24562119-24562149)
[»] chr4 (15 HSPs)
chr4 (172-267)||(54364673-54364768)
chr4 (171-267)||(19558301-19558397)
chr4 (171-267)||(17376661-17376757)
chr4 (171-267)||(5371800-5371895)
chr4 (171-267)||(12134853-12134949)
chr4 (171-263)||(14570225-14570317)
chr4 (172-267)||(12733032-12733127)
chr4 (173-267)||(38763662-38763757)
chr4 (187-267)||(49070722-49070802)
chr4 (218-267)||(17213072-17213121)
chr4 (279-319)||(12733050-12733090)
chr4 (64-94)||(14570144-14570174)
chr4 (64-94)||(17376805-17376835)
chr4 (64-93)||(5371947-5371976)
chr4 (263-315)||(38763664-38763715)
[»] scaffold0090 (3 HSPs)
scaffold0090 (171-267)||(1365-1461)
scaffold0090 (171-267)||(5745-5841)
scaffold0090 (171-264)||(35914-36006)
[»] chr5 (10 HSPs)
chr5 (171-267)||(11964919-11965015)
chr5 (171-267)||(20455198-20455294)
chr5 (171-267)||(21108478-21108574)
chr5 (173-267)||(33627606-33627700)
chr5 (171-267)||(14342868-14342964)
chr5 (176-264)||(20833214-20833301)
chr5 (187-267)||(23414118-23414198)
chr5 (195-259)||(24226695-24226759)
chr5 (64-94)||(11964838-11964868)
chr5 (64-93)||(20455346-20455375)
[»] scaffold0231 (1 HSPs)
scaffold0231 (171-260)||(14075-14164)
[»] chr7 (20 HSPs)
chr7 (171-268)||(4483697-4483794)
chr7 (171-267)||(8564727-8564823)
chr7 (171-267)||(21676059-21676155)
chr7 (171-267)||(28719424-28719520)
chr7 (173-267)||(16382519-16382613)
chr7 (200-264)||(15979209-15979273)
chr7 (172-267)||(44306324-44306420)
chr7 (176-264)||(21539343-21539431)
chr7 (187-267)||(13617718-13617798)
chr7 (178-267)||(39292885-39292973)
chr7 (64-94)||(4483616-4483646)
chr7 (64-94)||(8564837-8564867)
chr7 (198-267)||(14939684-14939754)
chr7 (198-267)||(15367277-15367347)
chr7 (64-94)||(28719343-28719373)
chr7 (171-265)||(45148512-45148606)
chr7 (65-94)||(16382400-16382429)
chr7 (219-267)||(19066507-19066555)
chr7 (187-267)||(31500108-31500188)
chr7 (179-223)||(46472941-46472985)
[»] scaffold0317 (1 HSPs)
scaffold0317 (171-267)||(14952-15048)
[»] chr6 (14 HSPs)
chr6 (171-267)||(17084459-17084555)
chr6 (171-261)||(23220670-23220759)
chr6 (171-252)||(16135252-16135333)
chr6 (171-265)||(11373965-11374059)
chr6 (218-267)||(16375279-16375328)
chr6 (173-267)||(22463326-22463421)
chr6 (263-320)||(22463363-22463419)
chr6 (218-267)||(31162114-31162163)
chr6 (171-263)||(29161553-29161644)
chr6 (64-94)||(18104749-18104779)
chr6 (64-94)||(23220589-23220619)
chr6 (65-94)||(11374147-11374176)
chr6 (65-94)||(29161806-29161835)
chr6 (263-320)||(32350965-32351021)
[»] chr1 (10 HSPs)
chr1 (195-267)||(33396293-33396366)
chr1 (195-263)||(20821981-20822049)
chr1 (172-265)||(40437490-40437583)
chr1 (173-256)||(46144656-46144739)
chr1 (173-267)||(49998533-49998628)
chr1 (263-320)||(40437524-40437580)
chr1 (171-223)||(77188-77240)
chr1 (64-94)||(20821843-20821873)
chr1 (64-93)||(77292-77321)
chr1 (173-222)||(52399500-52399549)
[»] scaffold1204 (1 HSPs)
scaffold1204 (171-267)||(1324-1420)
[»] scaffold0601 (1 HSPs)
scaffold0601 (195-267)||(2206-2278)
[»] scaffold0079 (2 HSPs)
scaffold0079 (171-267)||(5225-5321)
scaffold0079 (64-94)||(5446-5476)
[»] scaffold0183 (1 HSPs)
scaffold0183 (178-268)||(9787-9878)
[»] scaffold0174 (1 HSPs)
scaffold0174 (171-264)||(21192-21284)
[»] scaffold0057 (1 HSPs)
scaffold0057 (187-267)||(4840-4920)
[»] scaffold0005 (2 HSPs)
scaffold0005 (171-263)||(247059-247151)
scaffold0005 (64-94)||(247202-247232)
[»] scaffold0468 (1 HSPs)
scaffold0468 (171-262)||(12200-12290)
[»] scaffold0153 (1 HSPs)
scaffold0153 (181-267)||(755-841)
[»] scaffold0017 (2 HSPs)
scaffold0017 (174-267)||(11553-11647)
scaffold0017 (64-94)||(11506-11536)
[»] scaffold0013 (3 HSPs)
scaffold0013 (178-267)||(8331-8420)
scaffold0013 (64-94)||(8493-8523)
scaffold0013 (23-51)||(10658-10686)
[»] scaffold0047 (1 HSPs)
scaffold0047 (197-263)||(75970-76036)
[»] scaffold1278 (1 HSPs)
scaffold1278 (218-268)||(473-523)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 159 - 320
Target Start/End: Original strand, 25609003 - 25609164
Alignment:
Q  159 gtattcaccaaccaatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaa 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25609003 gtattcaccaaccaatcaacatatatgtattaatccacatcaactatatcatatagttcaacaacatcatactatttctcacaatccaagtaaaggagaa 25609102  T
Q  259 aatacaacatgtattcgttaaatcaacttcaactatatcctatggttcaacaacttcgcaca 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25609103 aatacaacatgtattcgttaaatcaacttcaactatatcctatggttcaacaacttcgcaca 25609164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 267
Target Start/End: Complemental strand, 45560411 - 45560319
Alignment:
Q  175 caacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||||||  ||||| | ||||||||||||||||||||||||||||||||||    
T  45560411 caacatatatgcattaatcaacatcaactatatcatatagttcaacaactccatacaacttctcacaatccaagtaaaggagaaaatacaaca 45560319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 25294938 - 25295034
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||| ||||||  ||||| |||||||||||  |||||||||||||||||||||||    
T  25294938 caattaacatatatgcattaatcaacatcaactatatcatatagttcaacaactccatacaatttctcacaagtcaagtaaaggagaaaatacaaca 25295034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 25756958 - 25757054
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||| ||||||  ||||| |||||||||||  |||||||||||||||||||||||    
T  25756958 caattaacatatatgcattaatcaacatcaactatatcatatagttcaacaactccatacaatttctcacaagtcaagtaaaggagaaaatacaaca 25757054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 3845338 - 3845250
Alignment:
Q  176 aacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaataca 264  Q
    |||||||||| | |||||   |||||||||||||||||||| ||||||  ||||| |||||||||||||||||||||||||||||||||    
T  3845338 aacatatatgcactaatcattatcaactatatcatatagttcaacaactccatacaatttctcacaatccaagtaaaggagaaaataca 3845250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 11543487 - 11543578
Alignment:
Q  175 caacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||||||  |||||||||||||||||| |||||  ||||||| ||||||||    
T  11543487 caacatatatgcattaatcaacatcaactatatcatatagttcaacaactccatactatttctcacaattcaagt-gaggagaagatacaaca 11543578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 22312642 - 22312733
Alignment:
Q  175 caacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||||||  |||||||||||||||||| |||||  ||||||| ||||||||    
T  22312642 caacatatatgcattaatcaacatcaactatatcatatagttcaacaactccatactatttctcacaattcaagt-gaggagaagatacaaca 22312733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 25608866 - 25608938
Alignment:
Q  22 atcatcaccacattatcatcattcatttaatcaccnnnnnnntcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  25608866 atcatcaccacattatcatcattcatttaatcaccaaaaaaatcaccatcacttaacatatatgcattcaccg 25608938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 20177181 - 20177085
Alignment:
Q  172 aatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaa-tccaagtaaaggagaaaatacaaca 267  Q
    |||||||||||||||||| | | ||||| |||  |||||||| || |||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  20177181 aatcaacatatatgtattcaccaacatcgacttcatcatataattcaacaacatcatattatttctcacaatttcaagtaaaggagaaaatacaaca 20177085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 20221908 - 20221812
Alignment:
Q  172 aatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaa-tccaagtaaaggagaaaatacaaca 267  Q
    |||||||||||||||||| | | ||||| |||  |||||||| || |||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  20221908 aatcaacatatatgtattcaccaacatcgacttcatcatataattcaacaacatcatattatttctcacaatttcaagtaaaggagaaaatacaaca 20221812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 19332795 - 19332722
Alignment:
Q  190 aatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatac 263  Q
    |||| |||||||||||||||||||||| ||||||  ||||   || |||||||||||||||||| |||||||||    
T  19332795 aatcaacatcaactatatcatatagttcaacaactccatatacttcctcacaatccaagtaaagaagaaaatac 19332722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 7469134 - 7469229
Alignment:
Q  173 atcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaagga-gaaaatacaaca 267  Q
    |||||||| |||  |||||||  | ||||||||||||||||||| ||||||  ||||| | |||||| ||| ||||||||||| ||||||||||||    
T  7469134 atcaacatgtattcattaatcagcttcaactatatcatatagttcaacaactccatacaacttctcataatacaagtaaaggaggaaaatacaaca 7469229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 38636975 - 38636880
Alignment:
Q  173 atcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaagga-gaaaatacaaca 267  Q
    |||||||| |||  ||||||||||  |||||||||||||||||| |||||| |||||  | |||||| |||  |||||||||| ||||||||||||    
T  38636975 atcaacatgtattcattaatccactccaactatatcatatagttcaacaacttcatataacttctcataatataagtaaaggaggaaaatacaaca 38636880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 22498569 - 22498490
Alignment:
Q  187 attaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||| ||||||||||||| |||||||| ||| ||  ||||| | |||||| | |||||||| ||||||||||||||||    
T  22498569 attaatcaacatcaactatataatatagttcaaccactccatac-acttctcatattccaagtataggagaaaatacaaca 22498490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 24238571 - 24238659
Alignment:
Q  179 atatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||| || ||||| ||||||||||||| |||||  | |||||| |||||   ||||||| ||||||||||||| || ||||||||||    
T  24238571 atatatataataatcaacatcaactatataatataactcaacaacttcatatactttctcataatccaagtaaagaagtaaatacaaca 24238659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 11543402 - 11543432
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  11543402 tcaccatcacttaacatatatgcattcaccg 11543432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 22312557 - 22312587
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  22312557 tcaccatcacttaacatatatgcattcaccg 22312587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 94
Target Start/End: Original strand, 17265745 - 17265774
Alignment:
Q  65 caccatcacttaacatatatgcattcaccg 94  Q
    ||||||||||||||||||||||||||||||    
T  17265745 caccatcacttaacatatatgcattcaccg 17265774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 94
Target Start/End: Complemental strand, 19332950 - 19332921
Alignment:
Q  65 caccatcacttaacatatatgcattcaccg 94  Q
    ||||||||||||||||||||||||||||||    
T  19332950 caccatcacttaacatatatgcattcaccg 19332921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 24266889 - 24266945
Alignment:
Q  263 caacatgtattcgttaaatcaacttcaactatatcctatggttcaacaacttcgcaca 320  Q
    |||||||||||| |||| |||||||||||||||| |||| ||||||| |||| |||||    
T  24266889 caacatgtattcattaa-tcaacttcaactatattctatagttcaaccactttgcaca 24266945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 8603590 - 8603686
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||| |||| ||||| |||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8603590 caattaacacatatgcattattcaacatcaactatatcatatagttcaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 8603686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 5229311 - 5229215
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||||||| ||||||| |||||||||||||||||| ||| ||||||  ||||| |||||||||||| |||||||||||||||||||||||    
T  5229311 caatcaacatatatgcattaatcgacatcaactatatcatattgttcaacaactccatacgatttctcacaattcaagtaaaggagaaaatacaaca 5229215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 11401544 - 11401633
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaa 260  Q
    |||| |||||||||| ||||||| ||||||||| |||||||||||| |||||| |||||| |||||||||||| ||||||||||||||||    
T  11401544 caattaacatatatgcattaatcaacatcaactttatcatatagttcaacaacttcatacaatttctcacaattcaagtaaaggagaaaa 11401633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 25105270 - 25105176
Alignment:
Q  173 atcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||||| |||  ||||||| || ||||||||||||| ||||| ||||||  ||||| ||||| |||||| |||||||||||||||||||||||    
T  25105270 atcaacatgtattcattaatcaacttcaactatatcatttagttcaacaactccatacaatttcccacaattcaagtaaaggagaaaatacaaca 25105176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 17319886 - 17319829
Alignment:
Q  263 caacatgtattcgttaaatcaacttcaactatatcctatggttcaacaacttcgcaca 320  Q
    |||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||    
T  17319886 caacatgtattcattaaatcaacttcaactatatcctatagttcaaaaacttcgcaca 17319829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 38377009 - 38376913
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||||||||||  |||| | | ||||| ||| ||||||||  || |||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  38377009 caatcaacatatacatattcaccaacatcgactttatcatatgattcaacaacatcatattatttctcaaaatccaagtaaaggagaaaatataaca 38376913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 11516796 - 11516703
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaataca 264  Q
    ||||||||||||||||||| | | | ||||||| | ||| |||||| ||||  | ||||| | |||||||||||||||||||| ||||||||||    
T  11516796 caatcaacatatatgtattcaccaatatcaactttttcacatagttcaacactaacatacaacttctcacaatccaagtaaagaagaaaataca 11516703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 17759615 - 17759544
Alignment:
Q  196 catcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||||||||||||||| || ||||||  ||||   ||||||||||||||| |||| ||||||||||||||    
T  17759615 catcaactatatcatataatttaacaactccatatactttctcacaatccaattaaaagagaaaatacaaca 17759544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 18968976 - 18969071
Alignment:
Q  173 atcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaagga-gaaaatacaaca 267  Q
    |||||||| |||  |||||||||| ||||||||||||||||||| |||| |  ||| | | |||||| ||| ||||||||||| ||||||||||||    
T  18968976 atcaacatgtattcattaatccacttcaactatatcatatagttcaacagctccattcaacttctcataatacaagtaaaggaggaaaatacaaca 18969071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 19060935 - 19060864
Alignment:
Q  196 catcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||||||||||||||| || ||||||  ||||   ||||||||||||||| |||| ||||||||||||||    
T  19060935 catcaactatatcatataatttaacaactccatatactttctcacaatccaattaaaagagaaaatacaaca 19060864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 37917649 - 37917583
Alignment:
Q  197 atcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatac 263  Q
    |||||||  |||||||| || ||||||||||||  ||||||||| |||||| |||||||||||||||    
T  37917649 atcaacttcatcatataattcaacaacatcatatgatttctcaccatccaaataaaggagaaaatac 37917583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Complemental strand, 5229355 - 5229325
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  5229355 tcaccatcacttaacatatatgcattcaccg 5229325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 11401463 - 11401493
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  11401463 tcaccatcacttaacatatatgcattcaccg 11401493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 40040398 - 40040332
Alignment:
Q  197 atcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatac 263  Q
    |||||||  |||||||| || ||||||||||||  |||| |||| |||||| |||||||||||||||    
T  40040398 atcaacttcatcatataattcaacaacatcatatgatttatcaccatccaaataaaggagaaaatac 40040332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 43428846 - 43428768
Alignment:
Q  173 atcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaa 251  Q
    |||||||| |||  ||||||| || || |||||||||||||||| ||||||  ||||| |||||||| ||| |||||||    
T  43428846 atcaacatgtattcattaatcaacttccactatatcatatagttcaacaactccatacaatttctcataatacaagtaa 43428768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 17392312 - 17392404
Alignment:
Q  172 aatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaataca 264  Q
    |||||||||||||||||| |   |||||||||   ||| ||| || || |||| ||||  |||||||||| | ||||||||||||||||||||    
T  17392312 aatcaacatatatgtattcactaacatcaacttcttcacataattcaataacaacataagatttctcacatttcaagtaaaggagaaaataca 17392404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 38377090 - 38377062
Alignment:
Q  64 tcaccatcacttaacatatatgcattcac 92  Q
    |||||||||||||||||||||||||||||    
T  38377090 tcaccatcacttaacatatatgcattcac 38377062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 24562068 - 24561972
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||||||| ||||||| ||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24562068 caatcaacatatatgcattaatcaacatcgactttatcatataattcaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 24561972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 18534796 - 18534892
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||  ||||  |||||||||||| |||||||||||||||||||||||    
T  18534796 caatcaacatatatgcattaatcaacatcaactatatcatatagttcaacaactccatataatttctcacaattcaagtaaaggagaaaatacaaca 18534892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 20272328 - 20272424
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||| |||||||||||||| | | ||||| ||| ||||||||| || || |||||||||| ||||||||||||||||||||||||||||||||||||    
T  20272328 caattaacatatatgtattcaccaacatcgactttatcatataattcaataacatcatacaatttctcacaatccaagtaaaggagaaaatacaaca 20272424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 22331695 - 22331783
Alignment:
Q  179 atatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||| ||||||| |||| ||||||||||||||||| ||||||  ||||| |||||||||||| |||||||||||||| ||||||||    
T  22331695 atatatgcattaatcaacataaactatatcatatagttcaacaactccatacaatttctcacaatacaagtaaaggagaagatacaaca 22331783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 43641709 - 43641781
Alignment:
Q  195 acatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||||||| ||||||||||| ||||||  ||||| |||||||||||| |||||||||||||||||||||||    
T  43641709 acatcaactacatcatatagttcaacaactccatacaatttctcacaattcaagtaaaggagaaaatacaaca 43641781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 6093802 - 6093894
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatac 263  Q
    |||| |||||||||| | || || |||  ||||||||||||||||| ||||||  ||||   |||||||||||||||||||||||||||||||    
T  6093802 caattaacatatatgcaatattcaacaataactatatcatatagttcaacaactccatatactttctcacaatccaagtaaaggagaaaatac 6093894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 45618405 - 45618465
Alignment:
Q  207 tcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||||||| |||||| |||||| |||||||||||| |||||||| ||||||||||||||    
T  45618405 tcatatagttcaacaacttcatacaatttctcacaattcaagtaaaagagaaaatacaaca 45618465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 19434751 - 19434681
Alignment:
Q  195 acatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaa 265  Q
    |||||||||| ||||||||||| || |||  | ||| |||||||||||| |||||||||||||||||||||    
T  19434751 acatcaactacatcatatagttcaaaaactccttacaatttctcacaattcaagtaaaggagaaaatacaa 19434681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 24840793 - 24840864
Alignment:
Q  195 acatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||| ||| ||||||||| || |||||||||||| ||||||||||||| |||||  ||||||||||||||||    
T  24840793 acatcgactttatcatataattcaacaacatcatattatttctcacaattcaagt-gaggagaaaatacaaca 24840864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 29113176 - 29113268
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatac 263  Q
    |||| |||||||||||||| | | | |||||||  |||||||| || || ||||||| | | ||||||||||||||| |||||||||||||||    
T  29113176 caattaacatatatgtattcaccaatatcaacttcatcatataattcaataacatcacattgtttctcacaatccaaataaaggagaaaatac 29113268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Complemental strand, 24562149 - 24562119
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  24562149 tcaccatcacttaacatatatgcattcaccg 24562119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 54364768 - 54364673
Alignment:
Q  172 aatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||||||||||||||| | | ||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54364768 aatcaacatatatgtattcaccaacatcgactttatcatataattcaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 54364673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 19558301 - 19558397
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||| ||||||||||||| |||||||||||||||||| ||| ||||||   |||| |||||||||||| |||||||||||||||||||||||    
T  19558301 caatcaacagatatgtattaatcaacatcaactatatcatatggttcaacaactcgatacaatttctcacaattcaagtaaaggagaaaatacaaca 19558397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 17376757 - 17376661
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||||||| ||||| | |||||||||| |||||||| || ||||||  ||||  |||||||||||| |||||||||||||||||||||||    
T  17376757 caatcaacatatatgcattaaccaacatcaactaaatcatataatttaacaaccccatataatttctcacaattcaagtaaaggagaaaatacaaca 17376661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 5371895 - 5371800
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| | ||||||  |||||  ||||||||||| || | ||||||||||||||||||    
T  5371895 caatcaacatatatgcattaatcaacatcaactatatcatatag-tcaacaactccatacagtttctcacaattcaggcaaaggagaaaatacaaca 5371800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 12134949 - 12134853
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||| |||||| ||| |||| || |||||||||||||||||||||| ||||||  ||||   |||||||||||||||||||| ||||||||||||||    
T  12134949 caattaacatagatgcattattcaacatcaactatatcatatagttcaacaactccatatactttctcacaatccaagtaaaagagaaaatacaaca 12134853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 14570225 - 14570317
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatac 263  Q
    ||||||||||||||||||| | | | |||||||  |||||| | || ||||||||||||||||||||||||||| || |||||||||||||||    
T  14570225 caatcaacatatatgtattcaccaatatcaacttcatcataaaattcaacaacatcatactatttctcacaatcaaaataaaggagaaaatac 14570317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 172 - 267
Target Start/End: Original strand, 12733032 - 12733127
Alignment:
Q  172 aatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||| |||  || |||| || ||||||||||| ||||||| |||||| ||  || |||||||||||| |||||||||||||||||||||||    
T  12733032 aatcaacatgtattcatcaatcaacttcaactatatcctatagttcaacaacttcgcaccatttctcacaatacaagtaaaggagaaaatacaaca 12733127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 38763662 - 38763757
Alignment:
Q  173 atcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaagga-gaaaatacaaca 267  Q
    |||||||| |||  |||||||||| ||||||||||||||||||| |||||| |||||| | || ||| ||| ||||||||||| ||||||||||||    
T  38763662 atcaacatgtattcattaatccacttcaactatatcatatagttcaacaacttcatacaacttttcataatacaagtaaaggaggaaaatacaaca 38763757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 49070722 - 49070802
Alignment:
Q  187 attaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||| ||||||||||||| |||||| | ||||||  ||||   ||||||||||||||||||||||||| |||||||||    
T  49070722 attaatcaacatcaactatataatatagctcaacaactccatatactttctcacaatccaagtaaaggagagaatacaaca 49070802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 17213121 - 17213072
Alignment:
Q  218 aacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  17213121 aacaacttcatacaatttctcacaattcaagtaaaggagaaaatacaaca 17213072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 12733050 - 12733090
Alignment:
Q  279 aatcaacttcaactatatcctatggttcaacaacttcgcac 319  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  12733050 aatcaacttcaactatatcctatagttcaacaacttcgcac 12733090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 14570144 - 14570174
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  14570144 tcaccatcacttaacatatatgcattcaccg 14570174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Complemental strand, 17376835 - 17376805
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  17376835 tcaccatcacttaacatatatgcattcaccg 17376805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 93
Target Start/End: Complemental strand, 5371976 - 5371947
Alignment:
Q  64 tcaccatcacttaacatatatgcattcacc 93  Q
    ||||||||||||||||||||||||||||||    
T  5371976 tcaccatcacttaacatatatgcattcacc 5371947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 38763664 - 38763715
Alignment:
Q  263 caacatgtattcgttaaatcaacttcaactatatcctatggttcaacaacttc 315  Q
    |||||||||||| |||| || |||||||||||||| ||| |||||||||||||    
T  38763664 caacatgtattcattaa-tccacttcaactatatcatatagttcaacaacttc 38763715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 1461 - 1365
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||| ||||||  ||||| |||||||||||| |||||||||||||||||||||||    
T  1461 caatcaacatatatgcattaatcaacgtcaactatatcatatagttcaacaactccatacaatttctcacaattcaagtaaaggagaaaatacaaca 1365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 5841 - 5745
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||| ||||||  ||||| |||||||||||| |||||||||||||||||||||||    
T  5841 caatcaacatatatgcattaatcaacgtcaactatatcatatagttcaacaactccatacaatttctcacaattcaagtaaaggagaaaatacaaca 5745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 36006 - 35914
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaataca 264  Q
    |||||||||||||| | || | | | |||||||  |||||||| || |||| |||||||| |||||||| | |||||||||| |||||||||||    
T  36006 caatcaacatatatattttcaccaatatcaactgcatcatataattcaacatcatcatacgatttctcatattccaagtaaa-gagaaaataca 35914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 11964919 - 11965015
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||||||| ||||||| ||||||||||||| || ||||| |||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  11964919 caatcaacatatatgcattaatcaacatcaactatattatttagttcaacaacttcatacaatttctcacaattcaagtaaaggagaaaatacaaca 11965015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 20455294 - 20455198
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||  ||| |  ||||||||||| |||||||||||||||||||||||    
T  20455294 caatcaacatatatgcattaatcaacatcaactatatcatatagttcaacaactccattcagtttctcacaattcaagtaaaggagaaaatacaaca 20455198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 21108478 - 21108574
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||||||||| || || |||||||||||||||||||||| ||||||  ||||   |||||||||||||||||||||||||||||||||||    
T  21108478 caatcaacatatatgtaatattcaacatcaactatatcatatagttcaacaactccatatactttctcacaatccaagtaaaggagaaaatacaaca 21108574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 33627700 - 33627606
Alignment:
Q  173 atcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||||| ||| |||||||| || ||||||||||||||||||| ||||||  ||||| |||| ||| ||| |||||||||||||||||||||||    
T  33627700 atcaacatgtatttattaatcaacttcaactatatcatatagttcaacaactccatacaatttttcataatacaagtaaaggagaaaatacaaca 33627606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 14342964 - 14342868
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||| |||||||||| |||| || |||||||||||||||||| ||| ||||||  ||||| |||||||||||| ||| ||| |||||||||||||||    
T  14342964 caattaacatatatgcattattcaacatcaactatatcatattgttcaacaactccataccatttctcacaattcaattaatggagaaaatacaaca 14342868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 20833301 - 20833214
Alignment:
Q  176 aacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaataca 264  Q
    |||||||||| |||| || |||||||||||||||||||||| ||||||  |||| ||||||||||||| |||||||| |||||||||||    
T  20833301 aacatatatgcattattcaacatcaactatatcatatagttcaacaactccatattatttctcacaatacaagtaaa-gagaaaataca 20833214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 23414118 - 23414198
Alignment:
Q  187 attaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||| ||||||||||||| |||||| | ||||||  |||||  ||||||||| |||||||||||||||||||||||||    
T  23414118 attaatcaacatcaactatataatatagctcaacaactccatacactttctcacattccaagtaaaggagaaaatacaaca 23414198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 24226759 - 24226695
Alignment:
Q  195 acatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaa 259  Q
    |||||||||| ||||||||||| ||||||  ||||| |||||||||||| |||||||||||||||    
T  24226759 acatcaactacatcatatagttcaacaactccatacaatttctcacaattcaagtaaaggagaaa 24226695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 11964838 - 11964868
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  11964838 tcaccatcacttaacatatatgcattcaccg 11964868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 93
Target Start/End: Complemental strand, 20455375 - 20455346
Alignment:
Q  64 tcaccatcacttaacatatatgcattcacc 93  Q
    ||||||||||||||||||||||||||||||    
T  20455375 tcaccatcacttaacatatatgcattcacc 20455346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 14164 - 14075
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaa 260  Q
    ||||||||||||||||||| | | ||||||||||||||||||| || |||||||||| ||||||||||||||||||| ||||||||||||    
T  14164 caatcaacatatatgtattcaccaacatcaactatatcatataattcaacaacatcacactatttctcacaatccaaataaaggagaaaa 14075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 4483697 - 4483794
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaacat 268  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||  ||||| |||||||||||| ||| |||||| |||||||||||||    
T  4483697 caatcaacatatatgcattaatcaacatcaactatatcatatagttcaacaactccatacaatttctcacaattcaaataaaggggaaaatacaacat 4483794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 8564823 - 8564727
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||| ||||||  ||||| |||||||||||| |||||||||||||| ||||||||    
T  8564823 caattaacatatatgcattaatcaacatcaactatatcatatagttcaacaactccatacgatttctcacaattcaagtaaaggagaacatacaaca 8564727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 21676155 - 21676059
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||| |||||||||| |||| || |||||||||||||||||||||| ||||||  ||||| |||||||||||| |||||||||||||||||||||||    
T  21676155 caattaacatatatgcattattcaacatcaactatatcatatagttcaacaactccatacaatttctcacaattcaagtaaaggagaaaatacaaca 21676059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 28719424 - 28719520
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||  ||||| |||||||| ||| |||||||| ||||||||||||||    
T  28719424 caatcaacatatatgcattaatcaacatcaactctatcatatagttcaacaactccatacaatttctcaaaattcaagtaaaagagaaaatacaaca 28719520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 16382519 - 16382613
Alignment:
Q  173 atcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||||||| || || |||||||||||||||||||||| ||||||  ||||   ||||||| |||||||||||||||||||||||||||    
T  16382519 atcaacatatatgtaatattcaacatcaactatatcatatagttcaacaactccatatactttctcataatccaagtaaaggagaaaatacaaca 16382613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 15979273 - 15979209
Alignment:
Q  200 aactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaataca 264  Q
    ||||||||||||||||| |||||| |||||| |||||||||||||||||||||| ||||||||||    
T  15979273 aactatatcatatagttcaacaacttcatacaatttctcacaatccaagtaaagtagaaaataca 15979209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 44306420 - 44306324
Alignment:
Q  172 aatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaa-tccaagtaaaggagaaaatacaaca 267  Q
    |||||||||||||||||| | | ||||| |||  |||||||| || |||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  44306420 aatcaacatatatgtattcaccaacatcgacttcatcatataattcaacaacatcatattatttctcacaatttcaagtaaaggagaaaatacaaca 44306324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 21539431 - 21539343
Alignment:
Q  176 aacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcac-aatccaagtaaaggagaaaataca 264  Q
    ||||| |||| ||||||| |||||||||||||||||||||| ||||||  ||||| ||||||||| ||||||||| ||||||||||||||    
T  21539431 aacatgtatgcattaatcaacatcaactatatcatatagttcaacaactccatacaatttctcacaaatccaagt-aaggagaaaataca 21539343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 13617718 - 13617798
Alignment:
Q  187 attaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||| ||||||||||||| |||||| | ||||||  |||||  ||||||||| |||||||||||||||||||||||||    
T  13617718 attaatcaacatcaactatataatatagctcaacaactccatacactttctcacattccaagtaaaggagaaaatacaaca 13617798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 39292973 - 39292885
Alignment:
Q  178 catatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||| ||| ||||||| |||| ||||| ||||||| ||| ||||||  ||||| |||||||||||| || |||||||||| |||||||||    
T  39292973 catacatgcattaatcaacat-aactagatcatatggttcaacaactccatacaatttctcacaatacacgtaaaggagagaatacaaca 39292885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 4483616 - 4483646
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  4483616 tcaccatcacttaacatatatgcattcaccg 4483646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Complemental strand, 8564867 - 8564837
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  8564867 tcaccatcacttaacatatatgcattcaccg 8564837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 14939684 - 14939754
Alignment:
Q  198 tcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaagga-gaaaatacaaca 267  Q
    ||||||||||||| ||||| |||||| |||||  | |||||| ||| ||||||||||| ||||||||||||    
T  14939684 tcaactatatcatttagttcaacaacttcatataacttctcataatacaagtaaaggaggaaaatacaaca 14939754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 15367277 - 15367347
Alignment:
Q  198 tcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaagga-gaaaatacaaca 267  Q
    ||||||||||||| ||||| |||||| |||||  | |||||| ||| ||||||||||| ||||||||||||    
T  15367277 tcaactatatcatttagttcaacaacttcatataacttctcataatacaagtaaaggaggaaaatacaaca 15367347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 28719343 - 28719373
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  28719343 tcaccatcacttaacatatatgcattcaccg 28719373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 265
Target Start/End: Original strand, 45148512 - 45148606
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaa 265  Q
    |||| |||||||||| | || || ||||||| |||||| ||||||| ||||||  ||||   | |||||||| ||||||||| ||||||||||||    
T  45148512 caattaacatatatgcaatattcaacatcaattatatcttatagttcaacaactccatatactatctcacaaaccaagtaaatgagaaaatacaa 45148606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 94
Target Start/End: Original strand, 16382400 - 16382429
Alignment:
Q  65 caccatcacttaacatatatgcattcaccg 94  Q
    ||||||||||||||||||||||||||||||    
T  16382400 caccatcacttaacatatatgcattcaccg 16382429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 19066507 - 19066555
Alignment:
Q  219 acaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||||||| | |||||||||||| |||||||| || |||||||||||    
T  19066507 acaacatcatgcaatttctcacaattcaagtaaaagaaaaaatacaaca 19066555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 31500108 - 31500188
Alignment:
Q  187 attaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||| || ||||||||||  ||||||| | |||| |  ||| |||| |||| ||||||||||| ||||||||||||||    
T  31500108 attaatcaacttcaactatattctatagttcatcaactttgtacaatttatcaccatccaagtaaaagagaaaatacaaca 31500188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 46472941 - 46472985
Alignment:
Q  179 atatatgtattaatccacatcaactatatcatatagttaaacaac 223  Q
    ||||||| ||||||| |||| ||||||||||||||||| ||||||    
T  46472941 atatatgcattaatcaacataaactatatcatatagttcaacaac 46472985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 15048 - 14952
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||| ||||||  ||||  |||||||||||| |||||||||||||||||||||||    
T  15048 caattaacatatatgcattaatcgacatcaactatatcatatagttcaacaactccatataatttctcacaattcaagtaaaggagaaaatacaaca 14952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 17084555 - 17084459
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||  ||||| |||||||||||| |||||||| ||||||||||||||    
T  17084555 caatcaacatatatgcattaatcaacataaactatatcatatagttcaacaactccatacaatttctcacaatacaagtaaatgagaaaatacaaca 17084459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 23220670 - 23220759
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaat 261  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| |||||| |||||  |||||||||||| |||||||||||||||||    
T  23220670 caatcaacatatatgcattaatcaacatcaactatatcatatagttcaacaac-tcatataatttctcacaattcaagtaaaggagaaaat 23220759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 16135252 - 16135333
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaa 252  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| || |||  ||||| |||||||||||||||||||||    
T  16135252 caatcaacatatatgcattaatcaacatcaactatatcatatagttcaataactccatacaatttctcacaatccaagtaaa 16135333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 11374059 - 11373965
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaa 265  Q
    |||| |||||||||| | || || |||||||||||||||||||||| ||||||   |||   | |||||||||||||||||||||||||||||||    
T  11374059 caattaacatatatgcaatattcaacatcaactatatcatatagttcaacaactctatatactatctcacaatccaagtaaaggagaaaatacaa 11373965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 16375279 - 16375328
Alignment:
Q  218 aacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  16375279 aacaacttcatacaatttctcacaattcaagtaaaggagaaaatacaaca 16375328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 22463421 - 22463326
Alignment:
Q  173 atcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaagga-gaaaatacaaca 267  Q
    |||||||| |||  ||||||| || ||||||||||| ||||||| || | | ||  || |||||||||||||||||||||||| ||||||||||||    
T  22463421 atcaacatgtattcattaatcaacttcaactatatcctatagttcaaaaccttcgcacaatttctcacaatccaagtaaaggaggaaaatacaaca 22463326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 22463419 - 22463363
Alignment:
Q  263 caacatgtattcgttaaatcaacttcaactatatcctatggttcaacaacttcgcaca 320  Q
    |||||||||||| |||| ||||||||||||||||||||| |||||| | |||||||||    
T  22463419 caacatgtattcattaa-tcaacttcaactatatcctatagttcaaaaccttcgcaca 22463363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 31162163 - 31162114
Alignment:
Q  218 aacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||| ||||||  ||||||||||| |||||||||||||||||||||||    
T  31162163 aacaacttcatacagtttctcacaattcaagtaaaggagaaaatacaaca 31162114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 29161644 - 29161553
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatac 263  Q
    |||| |||||||||| | || || ||||||||||||||||||||||  |||||  ||||   ||| |||| ||||||||||||||||||||||    
T  29161644 caattaacatatatgcaatattcaacatcaactatatcatatagttcgacaactccatatactttttcac-atccaagtaaaggagaaaatac 29161553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Complemental strand, 18104779 - 18104749
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  18104779 tcaccatcacttaacatatatgcattcaccg 18104749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 23220589 - 23220619
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  23220589 tcaccatcacttaacatatatgcattcaccg 23220619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 94
Target Start/End: Complemental strand, 11374176 - 11374147
Alignment:
Q  65 caccatcacttaacatatatgcattcaccg 94  Q
    ||||||||||||||||||||||||||||||    
T  11374176 caccatcacttaacatatatgcattcaccg 11374147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 94
Target Start/End: Complemental strand, 29161835 - 29161806
Alignment:
Q  65 caccatcacttaacatatatgcattcaccg 94  Q
    ||||||||||||||||||||||||||||||    
T  29161835 caccatcacttaacatatatgcattcaccg 29161806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 32350965 - 32351021
Alignment:
Q  263 caacatgtattcgttaaatcaacttcaactatatcctatggttcaacaacttcgcaca 320  Q
    |||||||||||| |||| |||||||||||||||| |||| ||||||| |||| |||||    
T  32350965 caacatgtattcattaa-tcaacttcaactatattctatagttcaaccactttgcaca 32351021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 33396293 - 33396366
Alignment:
Q  195 acatcaactatatcatatagttaaacaacatcatactatttctcacaa-tccaagtaaaggagaaaatacaaca 267  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| ||||||||||||||    
T  33396293 acatcaactatatcatatagttcaacaacatcatattatttctcacaattccaagtaaatgagaaaatacaaca 33396366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 20821981 - 20822049
Alignment:
Q  195 acatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatac 263  Q
    ||||||||| ||||||||| || |||||||||| ||||||||||||||||||| |||||||||||||||    
T  20821981 acatcaactttatcatataattcaacaacatcacactatttctcacaatccaaataaaggagaaaatac 20822049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 40437583 - 40437490
Alignment:
Q  172 aatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaa 265  Q
    ||||||||| |||  ||||||| || |||| |||||| ||||||| |||||| ||  || ||||||||||||||||||||||||| ||||||||    
T  40437583 aatcaacatgtattcattaatcaacttcaattatatcctatagttcaacaacttcgcacaatttctcacaatccaagtaaaggaggaaatacaa 40437490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 46144656 - 46144739
Alignment:
Q  173 atcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggag 256  Q
    |||||||| |||  |||||||||| ||||||||||||||||||| ||||||  ||||| | |||||| ||| ||||||||||||    
T  46144656 atcaacatgtattcattaatccacttcaactatatcatatagttcaacaactccatacaacttctcataatacaagtaaaggag 46144739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 49998628 - 49998533
Alignment:
Q  173 atcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaagga-gaaaatacaaca 267  Q
    |||||||| |||  ||||||||||  |||||||||||||||||| ||||||  ||||| | |||||| ||| ||||||||||| ||||||||||||    
T  49998628 atcaacatgtattcattaatccactccaactatatcatatagttcaacaactacatacaacttctcataatacaagtaaaggaggaaaatacaaca 49998533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 40437580 - 40437524
Alignment:
Q  263 caacatgtattcgttaaatcaacttcaactatatcctatggttcaacaacttcgcaca 320  Q
    |||||||||||| |||| |||||||||| |||||||||| ||||||||||||||||||    
T  40437580 caacatgtattcattaa-tcaacttcaattatatcctatagttcaacaacttcgcaca 40437524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 77240 - 77188
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaac 223  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||| ||||||    
T  77240 caatcaacatatatgcattaatcaccatcaactatatcatatagtttaacaac 77188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 20821843 - 20821873
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  20821843 tcaccatcacttaacatatatgcattcaccg 20821873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 93
Target Start/End: Complemental strand, 77321 - 77292
Alignment:
Q  64 tcaccatcacttaacatatatgcattcacc 93  Q
    ||||||||||||||||||||||||||||||    
T  77321 tcaccatcacttaacatatatgcattcacc 77292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 52399500 - 52399549
Alignment:
Q  173 atcaacatatatgtattaatccacatcaactatatcatatagttaaacaa 222  Q
    |||||||| |||  |||||||||| ||||||||||||||||||| |||||    
T  52399500 atcaacatgtattcattaatccacttcaactatatcatatagttcaacaa 52399549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 1420 - 1324
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||| |||||||||| | || || |||||||||||||||||||||| ||||||  ||||   |||||||||||||||||||||||||||||||||||    
T  1420 caattaacatatatgcaatattcaacatcaactatatcatatagttcaacaactccatatactttctcacaatccaagtaaaggagaaaatacaaca 1324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 2278 - 2206
Alignment:
Q  195 acatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||| ||| ||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2278 acatcgactttatcatataattcaacaacatcatattatttctcacaatccaagtaaaggagaaaatacaaca 2206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 5321 - 5225
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||| |||||||||  |||| || |||||||||||||||||||||| |||||| |||||| |||||||||||| ||| ||| |||||||||||||||    
T  5321 caattaacatatatacattattcaacatcaactatatcatatagttcaacaacttcataccatttctcacaattcaattaatggagaaaatacaaca 5225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Complemental strand, 5476 - 5446
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  5476 tcaccatcacttaacatatatgcattcaccg 5446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 9787 - 9878
Alignment:
Q  178 catatatgtattaatccacatcaactatatcatatagttaaacaacatcatacta-tttctcacaatccaagtaaaggagaaaatacaacat 268  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||||  ||||| | ||||||||||| |||||||| |||||||||||||||    
T  9787 catatatgcattaatcaacatcaactatatcatatagttcaacaactccatacaattttctcacaattcaagtaaaagagaaaatacaacat 9878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 21284 - 21192
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaataca 264  Q
    ||||||||||||||||||| ||| ||||| ||| ||||||||| ||  ||||||||||||||||||||||||| |||||  |||||||||||||    
T  21284 caatcaacatatatgtattcatcaacatcgactttatcatataattccacaacatcatactatttctcacaattcaagt-gaggagaaaataca 21192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 4840 - 4920
Alignment:
Q  187 attaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||||| | ||||||||||| |||||| | |||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  4840 attaatcaatatcaactatataatatagctcaacaacttcatacactttctcacaatccaagtaaaggagaaaatacaaca 4920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 247151 - 247059
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatac 263  Q
    ||||||||||||||||||| | | | |||||||  |||||| | || ||||||||||||||||||||||||||| || |||||||||||||||    
T  247151 caatcaacatatatgtattcaccaatatcaacttcatcataaaattcaacaacatcatactatttctcacaatcaaaataaaggagaaaatac 247059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Complemental strand, 247232 - 247202
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  247232 tcaccatcacttaacatatatgcattcaccg 247202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 12290 - 12200
Alignment:
Q  171 caatcaacatatatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaata 262  Q
    ||||| ||||||||| ||||||| |||||||||||||||||||||| |||||   ||||| |||||||||||| ||||| ||||||||||||    
T  12290 caatcgacatatatgcattaatcaacatcaactatatcatatagttcaacaattccatacaatttctcacaattcaagt-aaggagaaaata 12200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 755 - 841
Alignment:
Q  181 atatgtattaatccacatcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    ||||| ||||||| |||| ||||||||| ||| ||| |||||||||||    |||||||||||||||||||||||||||||||||||    
T  755 atatgcattaatcaacataaactatatcctatcgttcaacaacatcatgtactttctcacaatccaagtaaaggagaaaatacaaca 841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 174 - 267
Target Start/End: Original strand, 11553 - 11647
Alignment:
Q  174 tcaacatatatgtattaatccacat-caactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||||||||| ||||||| |||| ||||||||| |||||  | |||||| ||||||  |||||||||||||||||||||||||||||| ||||    
T  11553 tcaacatatatgcattaatcaacattcaactatataatataactcaacaacttcatacactttctcacaatccaagtaaaggagaaaataaaaca 11647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 11506 - 11536
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  11506 tcaccatcacttaacatatatgcattcaccg 11536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 8420 - 8331
Alignment:
Q  178 catatatgtattaatccacat-caactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatacaaca 267  Q
    |||||||  ||||||| |||| ||||||||| |||||| ||| |||| ||||||  |||||||||||||||||||||||||||||||||||    
T  8420 catatatacattaatcaacattcaactatataatatagctaa-caacttcatacactttctcacaatccaagtaaaggagaaaatacaaca 8331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Complemental strand, 8523 - 8493
Alignment:
Q  64 tcaccatcacttaacatatatgcattcaccg 94  Q
    |||||||||||||||||||||||||||||||    
T  8523 tcaccatcacttaacatatatgcattcaccg 8493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 10686 - 10658
Alignment:
Q  23 tcatcaccacattatcatcattcatttaa 51  Q
    |||||||||||||||||||||||||||||    
T  10686 tcatcaccacattatcatcattcatttaa 10658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 75970 - 76036
Alignment:
Q  197 atcaactatatcatatagttaaacaacatcatactatttctcacaatccaagtaaaggagaaaatac 263  Q
    |||||||  |||||||| || |||||||||||| | ||||||||||||||| ||||||| |||||||    
T  75970 atcaacttcatcatataattcaacaacatcatattgtttctcacaatccaaataaaggataaaatac 76036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1278 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1278
Description:

Target: scaffold1278; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 473 - 523
Alignment:
Q  218 aacaacatcatactatttctcacaatccaagtaaaggagaaaatacaacat 268  Q
    |||||| |||||| || ||||||||| |||||||||||||||| |||||||    
T  473 aacaacttcatacaatgtctcacaattcaagtaaaggagaaaacacaacat 523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4550 times since January 2019
Visitors: 4836