View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_21 (Length: 359)
Name: NF0735_low_21
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 18410077 - 18409938
Alignment:
| Q |
30 |
aatttgatgtgaatatttagcaaaaacaaaaccactatttttta--gagagaaaaacgcctatccatccgtattcatgaccatttcctttctcttccttc |
127 |
Q |
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| T |
18410077 |
aatttgatgtgaatatttagcaaaaacaaaaccactattttttatagagagaaaaacgcctatccatccgtattcatgaccatttcctttctcttccttc |
18409978 |
T |
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| Q |
128 |
tttcatttgatgtatctatagtttgctcataaacacattg |
167 |
Q |
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| T |
18409977 |
tttcatttgatgtatctatagtttgctcataaacacattg |
18409938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 18409863 - 18409795
Alignment:
| Q |
242 |
atcttctcccttttaatccacattttcctatcaattacttccttcaactgtttatgatgtttggtgctg |
310 |
Q |
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| T |
18409863 |
atcttctcccttttaatccacattttcctatcaattacttccttcaactgtttatgatgtttggtgctg |
18409795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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