View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0735_low_24 (Length: 323)

Name: NF0735_low_24
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0735_low_24
NF0735_low_24
[»] chr4 (2 HSPs)
chr4 (87-194)||(54487813-54487920)
chr4 (91-165)||(38305251-38305325)
[»] chr8 (2 HSPs)
chr8 (87-165)||(31247052-31247130)
chr8 (87-165)||(42599789-42599867)
[»] chr7 (1 HSPs)
chr7 (87-165)||(42752955-42753033)
[»] chr5 (1 HSPs)
chr5 (90-165)||(4569761-4569836)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 54487920 - 54487813
Alignment:
Q  87 catcaaaaagtatgctcaaatcacgtttcaaaaagcaaactcgcgtttgaggcttctaaatgtggaaccaaacaagcacgaaatcgattttacaaactca 186  Q
    |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  54487920 catcaaaaagtatgttgaaaccacgtttcaaaaagcaaactcgcgtttgaggcttccaaacgtggaaccaaacaagcacgaaatcgattttacaaactca 54487821  T
Q  187 atgttacc 194  Q
    ||||||||    
T  54487820 atgttacc 54487813  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 38305325 - 38305251
Alignment:
Q  91 aaaaagtatgctcaaatcacgtttcaaaaagcaaactcgcgtttgaggcttctaaatgtggaaccaaacaagcac 165  Q
    |||||||||||| ||| |||||||||||||||||||||| |||||||||||| ||| | ||||||||||||||||    
T  38305325 aaaaagtatgctgaaaccacgtttcaaaaagcaaactcgtgtttgaggcttccaaacgcggaaccaaacaagcac 38305251  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 31247052 - 31247130
Alignment:
Q  87 catcaaaaagtatgctcaaatcacgtttcaaaaagcaaactcgcgtttgaggcttctaaatgtggaaccaaacaagcac 165  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  31247052 catcaaaaagtatgctaaaatcacgtttcaaaaagcaaactcgcgtttgaggcttccaaacgcggaaccaaacaagcac 31247130  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 42599867 - 42599789
Alignment:
Q  87 catcaaaaagtatgctcaaatcacgtttcaaaaagcaaactcgcgtttgaggcttctaaatgtggaaccaaacaagcac 165  Q
    ||||||||| || | | ||| ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  42599867 catcaaaaaataagttgaaaccacgtttcaaaaagcaaactcgcgtttgaggcttccaaacgcggaaccaaacaagcac 42599789  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 42752955 - 42753033
Alignment:
Q  87 catcaaaaagtatgctcaaatcacgtttcaaaaagcaaactcgcgtttgaggcttctaaatgtggaaccaaacaagcac 165  Q
    |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  42752955 catcaaaaagtatgttgaaaccacgtttcaaaaagcaaactcgcgtttgaggcttccaaacgcggaaccaaacaagcac 42753033  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 4569761 - 4569836
Alignment:
Q  90 caaaaagtatgctcaaatcacgtttcaaaaagcaaactcgcgtttgaggcttctaaatgtggaaccaaacaagcac 165  Q
    ||||||||||| | ||| ||||||| ||||||||||| ||||||||||||| | ||| |||| |||||||||||||    
T  4569761 caaaaagtatgatgaaaccacgtttgaaaaagcaaacgcgcgtttgaggctgccaaacgtggtaccaaacaagcac 4569836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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