View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0735_low_3 (Length: 609)

Name: NF0735_low_3
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0735_low_3
NF0735_low_3
[»] chr5 (4 HSPs)
chr5 (158-449)||(37498327-37498655)
chr5 (488-539)||(18587502-18587553)
chr5 (14-81)||(37498731-37498798)
chr5 (487-539)||(4215218-4215269)
[»] chr4 (2 HSPs)
chr4 (290-470)||(42602820-42603015)
chr4 (488-529)||(46432428-46432469)
[»] chr7 (5 HSPs)
chr7 (487-541)||(26389159-26389213)
chr7 (486-538)||(2576964-2577016)
chr7 (486-533)||(1773696-1773743)
chr7 (488-539)||(18446570-18446621)
chr7 (486-541)||(26387890-26387945)
[»] chr8 (7 HSPs)
chr8 (488-541)||(3479031-3479084)
chr8 (487-536)||(3785924-3785973)
chr8 (488-541)||(31909228-31909281)
chr8 (487-538)||(19472613-19472665)
chr8 (487-538)||(19543538-19543590)
chr8 (487-538)||(19589106-19589158)
chr8 (488-529)||(15232220-15232261)
[»] chr6 (2 HSPs)
chr6 (489-540)||(21146952-21147003)
chr6 (488-541)||(33638908-33638960)
[»] chr1 (3 HSPs)
chr1 (495-541)||(16385556-16385602)
chr1 (487-539)||(12685085-12685137)
chr1 (37-70)||(31321195-31321228)
[»] scaffold0016 (1 HSPs)
scaffold0016 (488-528)||(48375-48415)
[»] chr2 (1 HSPs)
chr2 (488-541)||(20509234-20509288)


Alignment Details
Target: chr5 (Bit Score: 178; Significance: 1e-95; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 158 - 449
Target Start/End: Complemental strand, 37498655 - 37498327
Alignment:
Q  158 ctttggttcttccatcgtctttcttcctctattttcatcttactttcaccatttcttctagctatgtcctccatttatgctaaa---------------- 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
T  37498655 ctttggttcttccatcgtctttcttcctctattttcatcttactttcaccatttcttctagctatgtcctccatttatgctaaaaattcacaaatagatc 37498556  T
Q  242 ------ctgtaaaatttccatgattttcacaaacacatgcttcttttgcacattgattttgacaaggttgtggacgatgatgaaattgtcactgcattga 335  Q
          |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37498555 ataaaactgtaaaattcccatgattttcacaaaaacatgcttcttttgcacatcgattttgacaaggttgtggacgatgatgaaattgtcactgcattga 37498456  T
Q  336 ggcttttaaaccaggttaccccaa----------------tttcacatcgaatgagatgttgttgacgacttttgaagggaaagaaagggttcacattat 419  Q
    ||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37498455 ggcttttaaaccaggttaccccaatttccaagtttcttcatttcacatcgaatgagatgttgttgacgacttttgaagggaaagaaagggttcacattat 37498356  T
Q  420 cggacgtcgacataaagcaagtactacaat 449  Q
    | ||| ||||||||||| ||||||||||||    
T  37498355 c-gacttcgacataaagtaagtactacaat 37498327  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 539
Target Start/End: Complemental strand, 18587553 - 18587502
Alignment:
Q  488 tgttgaaatataggtagttatactcattttagagttagttagggtactagtt 539  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18587553 tgttgaaatataggtagttatacttattttagagttagttagggtactagtt 18587502  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 37498798 - 37498731
Alignment:
Q  14 aggatgatgtggcaatggctagcgccgctaatttggcaaattggatgatgagtcacattgtgagaggg 81  Q
    |||||||||||||| ||| | |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  37498798 aggatgatgtggcagtggttggcgccgctgatttggcaaattggatgatgagtcacaatgtgagaggg 37498731  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 4215218 - 4215269
Alignment:
Q  487 ctgttgaaatataggtagttatactcattttagagttagttagggtactagtt 539  Q
    |||||||||||||| |||||||||||| ||||||||||||||| | |||||||    
T  4215218 ctgttgaaatatagttagttatactca-tttagagttagttagtgcactagtt 4215269  T

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Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 290 - 470
Target Start/End: Complemental strand, 42603015 - 42602820
Alignment:
Q  290 gattttgacaaggttgtggacgatgatgaaattgtcactgcattgaggcttttaaaccaggttaccccaatt----------------tcacatcgaatg 373  Q
    |||||||||| ||| ||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||                ||||||||||||    
T  42603015 gattttgacagggtggtggatgatgatgaaactgtcactgcattgaggcttctaaaccaggttaccccaattcccaagtttcttcatttcacatcgaatg 42602916  T
Q  374 agatgttgttgacgacttttgaagggaaagaaagggttcacattatcggacgtcgacataaagcaagtactacaatggcccagcttgttccaaagtt 470  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||  ||| ||||||||||||||| |||||||||||| ||||| ||||||||||    
T  42602915 agatgttgttgagggcttttgaagggaaagaaagggttcacgttat-tgacttcgacataaagcaaggactacaatggcctagcttcttccaaagtt 42602820  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 529
Target Start/End: Original strand, 46432428 - 46432469
Alignment:
Q  488 tgttgaaatataggtagttatactcattttagagttagttag 529  Q
    |||| |||| ||| ||||||||||||||||||||||||||||    
T  46432428 tgttaaaatgtagttagttatactcattttagagttagttag 46432469  T

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Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 487 - 541
Target Start/End: Original strand, 26389159 - 26389213
Alignment:
Q  487 ctgttgaaatataggtagttatactcattttagagttagttagggtactagttta 541  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26389159 ctgttgaaatataggtagttatactcattttagagttagttagtgtactagttta 26389213  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 486 - 538
Target Start/End: Original strand, 2576964 - 2577016
Alignment:
Q  486 tctgttgaaatataggtagttatactcattttagagttagttagggtactagt 538  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  2576964 tctgttgaaatatagatagtgatactcattttagagttagttagggtactagt 2577016  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 486 - 533
Target Start/End: Complemental strand, 1773743 - 1773696
Alignment:
Q  486 tctgttgaaatataggtagttatactcattttagagttagttagggta 533  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1773743 tctgttgaattataggtagttatactcattttagagttagttagggta 1773696  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 18446570 - 18446621
Alignment:
Q  488 tgttgaaatataggtagttatactcattttagagttagttagggtactagtt 539  Q
    ||||||||||||| |||||||||||||||||||||||||||| | |||||||    
T  18446570 tgttgaaatatagttagttatactcattttagagttagttagtgcactagtt 18446621  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 541
Target Start/End: Original strand, 26387890 - 26387945
Alignment:
Q  486 tctgttgaaatataggtagttatactcattttagagttagttagggtactagttta 541  Q
    |||||||||||||| |||||||||||||||||| |||||||||  |||||||||||    
T  26387890 tctgttgaaatataagtagttatactcattttaaagttagttaatgtactagttta 26387945  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 488 - 541
Target Start/End: Original strand, 3479031 - 3479084
Alignment:
Q  488 tgttgaaatataggtagttatactcattttagagttagttagggtactagttta 541  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  3479031 tgttgaaatatagatagttatactcattttagagttagttagggtattagttta 3479084  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 487 - 536
Target Start/End: Complemental strand, 3785973 - 3785924
Alignment:
Q  487 ctgttgaaatataggtagttatactcattttagagttagttagggtacta 536  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  3785973 ctgttgaaatatagatagtgatactcattttagagttagttagggtacta 3785924  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 488 - 541
Target Start/End: Complemental strand, 31909281 - 31909228
Alignment:
Q  488 tgttgaaatataggtagttatactcattttagagttagttagggtactagttta 541  Q
    ||||||||||||| |||| |||||||||||||||| ||||| ||||||||||||    
T  31909281 tgttgaaatatagatagtaatactcattttagagtaagttaaggtactagttta 31909228  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 487 - 538
Target Start/End: Complemental strand, 19472665 - 19472613
Alignment:
Q  487 ctgttgaaatataggtagttatactcattttagagttagtt-agggtactagt 538  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  19472665 ctgttgaaatatagatagtaatactcattttagagttagttaagggtactagt 19472613  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 487 - 538
Target Start/End: Complemental strand, 19543590 - 19543538
Alignment:
Q  487 ctgttgaaatataggtagttatactcattttagagttagtt-agggtactagt 538  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  19543590 ctgttgaaatatagatagtaatactcattttagagttagttaagggtactagt 19543538  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 487 - 538
Target Start/End: Original strand, 19589106 - 19589158
Alignment:
Q  487 ctgttgaaatataggtagttatactcattttagagttagtt-agggtactagt 538  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  19589106 ctgttgaaatatagatagtaatactcattttagagttagttaagggtactagt 19589158  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 488 - 529
Target Start/End: Original strand, 15232220 - 15232261
Alignment:
Q  488 tgttgaaatataggtagttatactcattttagagttagttag 529  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  15232220 tgttgaaatataggtagttatactcattttagatttaattag 15232261  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 489 - 540
Target Start/End: Complemental strand, 21147003 - 21146952
Alignment:
Q  489 gttgaaatataggtagttatactcattttagagttagttagggtactagttt 540  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  21147003 gttgaaatatagatagttatactcattttaaagttagttagggtactagttt 21146952  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 488 - 541
Target Start/End: Complemental strand, 33638960 - 33638908
Alignment:
Q  488 tgttgaaatataggtagttatactcattttagagttagttagggtactagttta 541  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||| |||||||    
T  33638960 tgttgaaatatagg-agttatacttattttagagttagttagtgtattagttta 33638908  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 16385556 - 16385602
Alignment:
Q  495 atataggtagttatactcattttagagttagttagggtactagttta 541  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  16385556 atatagatagttatactcattttagagttagttagggtactagttta 16385602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 12685085 - 12685137
Alignment:
Q  487 ctgttgaaatataggtagttatactcattttagagttagttagggtactagtt 539  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||| ||||    
T  12685085 ctgttgaaatatagttagttatactcattttagagttagttagtgtacgagtt 12685137  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 31321195 - 31321228
Alignment:
Q  37 gccgctaatttggcaaattggatgatgagtcaca 70  Q
    |||||| |||||||||||||||||||||||||||    
T  31321195 gccgctgatttggcaaattggatgatgagtcaca 31321228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 488 - 528
Target Start/End: Original strand, 48375 - 48415
Alignment:
Q  488 tgttgaaatataggtagttatactcattttagagttagtta 528  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48375 tgttgaaatataggtagttatactcattttagagttagtta 48415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 488 - 541
Target Start/End: Complemental strand, 20509288 - 20509234
Alignment:
Q  488 tgttgaaatataggtagttatactcattttagagttagtta-gggtactagttta 541  Q
    |||| ||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  20509288 tgttaaaatataagtagttatactcattttagagttagttaggggtactagttta 20509234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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