View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0735_low_36 (Length: 294)
Name: NF0735_low_36
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 32786703 - 32786470
Alignment:
| Q |
1 |
tgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32786703 |
tgcagtgccatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagag |
32786604 |
T |
|
| Q |
101 |
aagactgccagattggtttctgcttatgcttcagatgacggatcgacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786603 |
aagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttt |
32786504 |
T |
|
| Q |
201 |
tgactggaaatcaaggtcaggttcgtctgaattg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32786503 |
tgactggaaatcaaggtcaggttcgtctgaattg |
32786470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32310569 - 32310802
Alignment:
| Q |
1 |
tgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32310569 |
tgcagtgccatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagag |
32310668 |
T |
|
| Q |
101 |
aagactgccagattggtttctgcttatgcttcagatgacggatcgacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32310669 |
aagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaacctcgatgttt |
32310768 |
T |
|
| Q |
201 |
tgactggaaatcaaggtcaggttcgtctgaattg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32310769 |
tgactggaaatcaaggtcaggttcgtctgaattg |
32310802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 28222017 - 28222250
Alignment:
| Q |
1 |
tgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28222017 |
tgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggcttaagag |
28222116 |
T |
|
| Q |
101 |
aagactgccagattggtttctgcttatgcttcagatgacggatcgacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttt |
200 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28222117 |
aagactgccatattggtttttgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttt |
28222216 |
T |
|
| Q |
201 |
tgactggaaatcaaggtcaggttcgtctgaattg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
28222217 |
tgactggaaatcaaggtcaggttcgtctgaattg |
28222250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32306439 - 32306672
Alignment:
| Q |
1 |
tgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagag |
100 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32306439 |
tgcagtgccatctggagcatattttgacactcactactatcagagtttgttgagaggaagagggttattgttttctgatcaacagctgatggctcaagag |
32306538 |
T |
|
| Q |
101 |
aagactgccagattggtttctgcttatgcttcagatgacggatcgacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306539 |
aagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttt |
32306638 |
T |
|
| Q |
201 |
tgactggaaatcaaggtcaggttcgtctgaattg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32306639 |
tgactggaaatcaaggtcaggttcgtctgaattg |
32306672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 32813906 - 32813681
Alignment:
| Q |
9 |
catctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813906 |
catctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgc |
32813807 |
T |
|
| Q |
109 |
cagattggtttctgcttatgcttcagatgacggatcgacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactgga |
208 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813806 |
cagattggtttttgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactgga |
32813707 |
T |
|
| Q |
209 |
aatcaaggtcaggttcgtctgaattg |
234 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
32813706 |
aatcaaggtcaggttcgtctgaattg |
32813681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 32564243 - 32564018
Alignment:
| Q |
9 |
catctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgc |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32564243 |
catctggagcattttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgc |
32564144 |
T |
|
| Q |
109 |
cagattggtttctgcttatgcttcagatgacggatcgacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactgga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32564143 |
cagattggtttctgcttatgcttcagatgacggatctacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgacttga |
32564044 |
T |
|
| Q |
209 |
aatcaaggtcaggttcgtctgaattg |
234 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
32564043 |
aatcaaggtcaggttcgtctgaattg |
32564018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 28214267 - 28214034
Alignment:
| Q |
1 |
tgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28214267 |
tgcagtgtcatctggagcatcttttgacactcactactatcagagattgttgagaggaagagggttattgtttgctgatcaacagctgatggctgaagag |
28214168 |
T |
|
| Q |
101 |
aagactgccagattggtttctgcttatgcttcagatgacggatcgacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttt |
200 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28214167 |
aagacagccaaattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgatgaaattgtctaaccttgatgttt |
28214068 |
T |
|
| Q |
201 |
tgactggaaatcaaggtcaggttcgtctgaattg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
28214067 |
tgactggaaatcaaggtcaggttcgtctgaattg |
28214034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 32793012 - 32792853
Alignment:
| Q |
75 |
ctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcgacctttcggatggatttcgcaagggttat |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32793012 |
ctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttat |
32792913 |
T |
|
| Q |
175 |
gttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32792912 |
gttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattg |
32792853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 117 - 234
Target Start/End: Complemental strand, 32799638 - 32799521
Alignment:
| Q |
117 |
tttctgcttatgcttcagatgacggatcgacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaagg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32799638 |
tttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaagg |
32799539 |
T |
|
| Q |
217 |
tcaggttcgtctgaattg |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
32799538 |
tcaggttcgtctgaattg |
32799521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 60 - 235
Target Start/End: Original strand, 28158816 - 28158991
Alignment:
| Q |
60 |
gagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcgacctttcggatgga |
159 |
Q |
| |
|
||||| || |||| ||| |||||||||| |||||| |||||| ||||| |||||| |||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
28158816 |
gagggctactgttcgctaatcaacagctcatggctggagagaacactgctagattgatttctgctaatgcttccgatgacggatcaacctttcggatgga |
28158915 |
T |
|
| Q |
160 |
tttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgt |
235 |
Q |
| |
|
||| |||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28158916 |
tttggcaagggtggtgttgaaattgtctaatattgatgttttgactggaaataaaggtcaggttcgtctgaattgt |
28158991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 235
Target Start/End: Original strand, 28177479 - 28177660
Alignment:
| Q |
60 |
gagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcgacctttcggatgga |
159 |
Q |
| |
|
||||| || |||| ||| ||||||||||||||||| ||||| | ||| || ||| |||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
28177479 |
gagggctactgttcgctaatcaacagctgatggctggagagagcagtgctaggttgatttctgctaatgcttccgatgacggatcaacctttcggatgga |
28177578 |
T |
|
| Q |
160 |
tttcgcaagggttatgttg------aaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgt |
235 |
Q |
| |
|
||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28177579 |
ttttgcaagggtggtgttggagttcaaattgtctaatcttgatgttttgactggaaatcaaggtcaggttcgtctgaattgt |
28177660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 28161723 - 28161794
Alignment:
| Q |
164 |
gcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgt |
235 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28161723 |
gcaaggattgtgttgaaattgtctaatattgatgttttgactggaaatcaaggtcaggtttgtctgaattgt |
28161794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 28171760 - 28171831
Alignment:
| Q |
164 |
gcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgt |
235 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28171760 |
gcaagggtggtgttgaaattgtctaatgttgatgttttgactggaaatcaaggtcaggttcatctgaattgt |
28171831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 28147825 - 28147881
Alignment:
| Q |
176 |
ttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaat |
232 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||| |||||||||| || |||||||| |
|
|
| T |
28147825 |
ttgaaattgtctaattttgatgtattgacttgaagtcaaggtcagattggtctgaat |
28147881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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