View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_38 (Length: 293)
Name: NF0735_low_38
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 39553836 - 39553980
Alignment:
| Q |
79 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
178 |
Q |
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| T |
39553836 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
39553935 |
T |
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| Q |
179 |
caaagacttgttatcattgggccgagctatctcggcccatgatac |
223 |
Q |
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| T |
39553936 |
caaagacttgttatcattgggccgagctatctcggcccatgatac |
39553980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 39543817 - 39543961
Alignment:
| Q |
79 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
178 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| |
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| T |
39543817 |
cagagatggggacatacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcattgttgggat |
39543916 |
T |
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| Q |
179 |
caaagacttgttatcattgggccgagctatctcggcccatgatac |
223 |
Q |
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| T |
39543917 |
caaagacttgttattgttgggtcgagctatctcggcccatgatac |
39543961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 39586948 - 39587090
Alignment:
| Q |
81 |
gagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggatca |
180 |
Q |
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|||||||||| ||||||||||| | |||||||||||||||||||||| ||| |||||||||||| |||| | ||||||||||||| ||||||||||||| |
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| T |
39586948 |
gagatggggatgtacatgtcatagagtgaaggatggatggaaggtgggtgtcttggggtcagaagggacctttgaaaacaaggttgtgttgttgggatca |
39587047 |
T |
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| Q |
181 |
aagacttgttatcattgggccgagctatctcggcccatgatac |
223 |
Q |
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| T |
39587048 |
aagacttgttattgctcgatcgggctatctcggcccatgatac |
39587090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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