View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0735_low_4 (Length: 563)

Name: NF0735_low_4
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0735_low_4
NF0735_low_4
[»] chr5 (6 HSPs)
chr5 (11-534)||(32795895-32796419)
chr5 (241-520)||(19670138-19670419)
chr5 (88-245)||(19667910-19668067)
chr5 (11-84)||(19670674-19670747)
chr5 (11-84)||(32795582-32795655)
chr5 (13-78)||(26896586-26896651)
[»] chr1 (5 HSPs)
chr1 (88-520)||(22827411-22827845)
chr1 (11-84)||(22840973-22841046)
chr1 (11-84)||(22827079-22827152)
chr1 (22-84)||(22826684-22826746)
chr1 (15-84)||(24272755-24272824)
[»] chr6 (16 HSPs)
chr6 (104-534)||(2922211-2922644)
chr6 (223-512)||(11678290-11678581)
chr6 (311-471)||(27413719-27413879)
chr6 (88-279)||(27413893-27414085)
chr6 (11-84)||(13558027-13558100)
chr6 (21-84)||(13556056-13556119)
chr6 (11-84)||(2921894-2921967)
chr6 (12-85)||(16403529-16403601)
chr6 (467-519)||(27340991-27341043)
chr6 (467-519)||(27401731-27401783)
chr6 (11-84)||(2923210-2923284)
chr6 (11-84)||(11678844-11678917)
chr6 (11-53)||(27340686-27340728)
chr6 (11-53)||(27401426-27401468)
chr6 (6-84)||(16910148-16910226)
chr6 (15-84)||(11677130-11677199)
[»] scaffold0003 (2 HSPs)
scaffold0003 (311-471)||(79246-79406)
scaffold0003 (88-279)||(79040-79232)
[»] scaffold0007 (1 HSPs)
scaffold0007 (15-84)||(260217-260286)
[»] chr7 (4 HSPs)
chr7 (11-84)||(7961781-7961854)
chr7 (11-64)||(1103162-1103215)
chr7 (11-84)||(11269961-11270034)
chr7 (7-84)||(1716681-1716758)
[»] chr2 (3 HSPs)
chr2 (13-84)||(10128507-10128578)
chr2 (11-83)||(8761225-8761298)
chr2 (11-84)||(37965532-37965606)
[»] chr4 (8 HSPs)
chr4 (11-84)||(27272575-27272648)
chr4 (11-76)||(53469713-53469778)
chr4 (16-84)||(10395972-10396040)
chr4 (14-84)||(29235173-29235244)
chr4 (7-52)||(13816943-13816988)
chr4 (11-83)||(53472595-53472665)
chr4 (13-71)||(21206356-21206414)
chr4 (10-84)||(32015166-32015240)
[»] chr3 (3 HSPs)
chr3 (13-84)||(31141410-31141481)
chr3 (11-84)||(25889628-25889701)
chr3 (22-76)||(30046435-30046489)
[»] chr8 (1 HSPs)
chr8 (44-84)||(42001905-42001945)


Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 11 - 534
Target Start/End: Complemental strand, 32796419 - 32795895
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaataaatctccaatacttgaatcttactcg 110  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||||    
T  32796419 ataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattccttgcacaaataaatctccaaaacttgaatcttactcg 32796320  T
Q  111 cctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcacttaaaagagtgctcagacacttggcg 210  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||    
T  32796319 cccagacattgccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacagcgcattggactgcactcaaaagagtgctcagatgcttggcg 32796220  T
Q  211 ggttcctgtgacaaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgcgatgagaaggcgacaaggatgattatatctcc 310  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  32796219 ggttcctgtaacaaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgcagtgagaaggcgacaaggatgattatatctcc 32796120  T
Q  311 accactggttatctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaag 410  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  32796119 accactggttatctgttatatcttggcagcacacccatctcttggagctcttgaaaacaacgttttgttgctcggtctttcaaagaagcagaatataaag 32796020  T
Q  411 ccttggctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacct 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32796019 ccttggctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacct 32795920  T
Q  511 cggggcta-ccaccttagcgctaat 534  Q
    ||| |||| ||| ||||||||||||    
T  32795919 cggtgctacccatcttagcgctaat 32795895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 241 - 520
Target Start/End: Original strand, 19670138 - 19670419
Alignment:
Q  241 acgacagccccactaaatctccacgcctactcggatgcga--tgagaaggcgacaaggatgattatatctccaccactggttatctgttatatcttggca 338  Q
    |||||||||||||||||||||||||||||||||||||||   |  | ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19670138 acgacagccccactaaatctccacgcctactcggatgcggacttggtaggcgacaaggatgattatatctccaccactagttatctgttatatcttggca 19670237  T
Q  339 gcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaagccttggctgacacggcaagtgagctgct 438  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||| || | ||||| ||||||||||||||||||||||| |||||||||||||    
T  19670238 gcacgcccatctcatggagctctcgaaaacaacgttctgttgctcgatcttccacaaaagcaaaatataaagccttggctgacacgacaagtgagctgct 19670337  T
Q  439 atgggtcctttccctattcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacctcggggctacc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  19670338 atgggtcctttccctattcactgaacttggccacactccaacagccaatccagtcatctattgtgacaacctcggtgctacc 19670419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 88 - 245
Target Start/End: Original strand, 19667910 - 19668067
Alignment:
Q  88 ctccaatacttgaatcttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcactta 187  Q
    ||||||||||||| ||||||||||| | ||||| |  ||||||||| |||||  |||||||||||||||||||||||||||||||||||||| ||| | |    
T  19667910 ctccaatacttgagtcttactcgcccatacatttcattcagcacaagcaaacctgcccaattcatgcagaatcccagaacggcgcattggaccgcaatca 19668009  T
Q  188 aaagagtgctcagacacttggcgggttcctgtgacaaaggcgtcttcatctcgacgac 245  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19668010 aaagagttctcagatacttggcgggttcctgtgacaaaggcgtcttcatctcgacgac 19668067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 19670674 - 19670747
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  19670674 ataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtaccaata 19670747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 32795655 - 32795582
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |||||||    
T  32795655 ataatatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtaccaata 32795582  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 26896586 - 26896651
Alignment:
Q  13 aatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgca 78  Q
    |||| |||||||||||||||||||| | ||||||||||||  | |||||||| |||||| ||||||    
T  26896586 aataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgca 26896651  T

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Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 88 - 520
Target Start/End: Complemental strand, 22827845 - 22827411
Alignment:
Q  88 ctccaatacttgaatcttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcactta 187  Q
    ||||||||||||| ||||||| ||| ||||||| || ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |    
T  22827845 ctccaatacttgagtcttacttgcccagacattgccttcagcacaaacaaactcgcgcaattcatgcaaaaccccagaacggcgcattggactgcactca 22827746  T
Q  188 aaagagtgctcagacacttggcgggttcctgtgacaaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgcga--tgaga 285  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||||| || ||||| || ||| ||||||||||||||||||| ||||||   || |     
T  22827745 aaagagtgctcaaatacttggcgggttcctgtgacaaaggcatcttcatttcaacgaccgctccattaaatctccacgcctactctgatgcggactgggc 22827646  T
Q  286 aggcgacaaggatgattatatctccaccactggttatctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcga 385  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||     
T  22827645 aagcgacaaagatgattatatctccaccactggttatctgttatatcttggcagcacgcccatctcttggagctgtcaaaaacaacgttttgttgctcgc 22827546  T
Q  386 tctttcaaagaagcagaatataaagccttggctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggccacactccaacaacca 485  Q
    |||| || ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22827545 tcttccatagaagcagaatataaagccttggctgacacgacaagtgtgctgctatgggtcctttccctattcaatgaacttggccacactccaacaacca 22827446  T
Q  486 atccagtcatctattgtgacaacctcggggctacc 520  Q
    |||||||||| ||||||||||||||||| ||||||    
T  22827445 atccagtcatttattgtgacaacctcggtgctacc 22827411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 22840973 - 22841046
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| |||||| ||||||||||||    
T  22840973 ataatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcaccaata 22841046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 22827152 - 22827079
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||||||||   |||| ||||||||||||    
T  22827152 ataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcaccaata 22827079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 22826746 - 22826684
Alignment:
Q  22 aaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||| ||||||| ||| |||||||||||||||||||| ||||| |||||| ||||||||||||    
T  22826746 aaatctgcaaaggcttggtcatataaataaaagccttatgtgttagtatttcttgcaccaata 22826684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 24272755 - 24272824
Alignment:
Q  15 tatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||||||||||||||||||||||    ||||| ||||| ||||||||||| |||||| ||||||||||||    
T  24272755 tatgaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgttagtatttcttgcaccaata 24272824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 104 - 534
Target Start/End: Complemental strand, 2922644 - 2922211
Alignment:
Q  104 ttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcacttaaaagagtgctcagaca 203  Q
    ||||||||||||||||| || ||| ||||||||||||| ||||||||||||| || |||| ||||||||||||||||||||| ||||||||||||||| |    
T  2922644 ttactcgcctagacattgccttcatcacaaacaaactcacccaattcatgcaaaaccccataacggcgcattggactgcactcaaaagagtgctcagata 2922545  T
Q  204 cttggcgggttcctgtgacaaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgc-ga-tgagaaggcgacaaggatgat 301  Q
    |||||| ||||||| |||||||||||||||||| |||||||| |||||| |||||||||| ||||||||  |||| || || | | |||||| |||||||    
T  2922544 cttggcaggttcctatgacaaaggcgtcttcatttcgacgaccgccccattaaatctccatgcctactcaaatgcagactgggcaagcgacatggatgat 2922445  T
Q  302 tatatctccaccactggttatctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcag 401  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| | |||| || |||||||     
T  2922444 tatatctccaccactagttatctgttatatcttggcagcacacccatctcttagagctctcgaaaacaacgttctgttgcttgctcttccatagaagcaa 2922345  T
Q  402 aatataaagccttggctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggccacactccaacaaccaatccagtcatctattg 501  Q
    ||||||||||||||||| ||||||  |||||||| |||||||||||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||||    
T  2922344 aatataaagccttggctaacacggagagtgagcttctatgggtcctttccctattcaatgaacttggtcaccctccaacagccaatccagtcatctattg 2922245  T
Q  502 tgacaacctcggggcta-ccaccttagcgctaat 534  Q
    |||||||||| | |||| ||||||||| ||||||    
T  2922244 tgacaacctcagtgctacccaccttagtgctaat 2922211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 223 - 512
Target Start/End: Original strand, 11678290 - 11678581
Alignment:
Q  223 aaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgc-ga-tgagaaggcgacaaggatgattatatctccaccactggtt 320  Q
    |||||| |||||||||| |||||||||||||||||| ||||||||||||| ||||| || || | | |||  |||||||||||||||||||||||| |||    
T  11678290 aaaggcttcttcatctcaacgacagccccactaaatatccacgcctactcagatgcagactgggcatgcggtaaggatgattatatctccaccactagtt 11678389  T
Q  321 atctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaagccttggctga 420  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||||    
T  11678390 atctgttatatcttggcagcacacccatctcttggagctctcgaaaacaacgttttgttgctcgatcttccacagaagcagagtataaagccttagctga 11678489  T
Q  421 cacggcaagtgagctgctatgggtcctttccctattcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacctcg 512  Q
    || | | ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||  ||||||||||| ||||||||    
T  11678490 catgacgagtgagctgatatgggtcctttccttattcactgaacttggccacactccaacagccattccaaacatctattgtggcaacctcg 11678581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 311 - 471
Target Start/End: Complemental strand, 27413879 - 27413719
Alignment:
Q  311 accactggttatctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaag 410  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||  | |||||||||||||||||    
T  27413879 accactggttatctattatatcttggcagcacgcccatctcttggagctctctaaaacaatgttctgttgctcgctcttctacagaagcagaatataaag 27413780  T
Q  411 ccttggctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggcca 471  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||| || |||||||    
T  27413779 ccttggctgacacggcgagtgagctgttatgggtcctttccctattcactaaatttggcca 27413719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 88 - 279
Target Start/End: Complemental strand, 27414085 - 27413893
Alignment:
Q  88 ctccaatacttgaatcttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcactta 187  Q
    |||||| ||||||  ||||||| |||||||||| || ||| ||||||||||||||||||||||||||| ||  ||||||||| | ||||||||||||| |    
T  27414085 ctccaacacttgagccttactctcctagacattgccttcaacacaaacaaactcgcccaattcatgcaaaactccagaacggtgtattggactgcactca 27413986  T
Q  188 aaagagtgctcagacac-ttggcgggttcctgtgacaaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgcg 279  Q
    |||||||||||  | || ||||||||||||||||||||||| |||||||| |||||||| | |||| |||||||||| |||||||| ||||||    
T  27413985 aaagagtgctcctatactttggcgggttcctgtgacaaaggtgtcttcatttcgacgaccgacccattaaatctccatgcctactcagatgcg 27413893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 13558100 - 13558027
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||| | ||||||||||    
T  13558100 ataatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcaccaata 13558027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 13556119 - 13556056
Alignment:
Q  21 gaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |||||| ||||||||||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaata 13556056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 2921967 - 2921894
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    ||||||||||||||||||||| ||||| || ||||||||||||| ||| ||||| |||||| ||||||||||||    
T  2921967 ataatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcaccaata 2921894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 16403529 - 16403601
Alignment:
Q  12 taatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaataa 85  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||   ||||| ||||||||||||    
T  16403529 taatatgaagaaatatgcaa-gacttagtcatataaataaaagtcttgtgtgtttatattatttgcaccaataa 16403601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 467 - 519
Target Start/End: Complemental strand, 27341043 - 27340991
Alignment:
Q  467 ggccacactccaacaaccaatccagtcatctattgtgacaacctcggggctac 519  Q
    |||||||||||| || ||||||||||||||||||||||||||||||| |||||    
T  27341043 ggccacactccaccatccaatccagtcatctattgtgacaacctcggtgctac 27340991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 467 - 519
Target Start/End: Complemental strand, 27401783 - 27401731
Alignment:
Q  467 ggccacactccaacaaccaatccagtcatctattgtgacaacctcggggctac 519  Q
    |||||||||||| || ||||||||||||||||||||||||||||||| |||||    
T  27401783 ggccacactccaccatccaatccagtcatctattgtgacaacctcggtgctac 27401731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 2923284 - 2923210
Alignment:
Q  11 ataatatgaagaaatatgcaaa-gacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||||||||||||||||||||| | ||| |||||||||||||||| ||||||||| |||| | ||||||| ||||    
T  2923284 ataatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcactaata 2923210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 11678844 - 11678917
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||  ||||||||| |||||| ||  ||||||||    
T  11678844 ataatatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttctaacaccaata 11678917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 27340728 - 27340686
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaa 53  Q
    ||||||||||||||||||||||| ||| |||||||||||||||    
T  27340728 ataatatgaagaaatatgcaaaggcttggtcatataaataaaa 27340686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 27401468 - 27401426
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaa 53  Q
    ||||||||||||||||||||||| ||| |||||||||||||||    
T  27401468 ataatatgaagaaatatgcaaaggcttggtcatataaataaaa 27401426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 16910226 - 16910148
Alignment:
Q  6 gtcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||| ||||||||||| ||||||||||||||| |   ||||||||||||  |||||||| ||||||  |||| ||||||    
T  16910226 gtcggataatatgaaggaatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgcgccaata 16910148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 11677130 - 11677199
Alignment:
Q  15 tatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||||||||||||||||||  ||  ||||||||||||||  ||||||||| |||||| ||  ||||||||    
T  11677130 tatgaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttctaacaccaata 11677199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 113; Significance: 6e-57; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 311 - 471
Target Start/End: Original strand, 79246 - 79406
Alignment:
Q  311 accactggttatctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaag 410  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||  | |||||||||||||||||    
T  79246 accactggttatctattatatcttggcagcacgcccatctcttggagctctctaaaacaatgttctgttgctcgctcttctacagaagcagaatataaag 79345  T
Q  411 ccttggctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggcca 471  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||| || |||||||    
T  79346 ccttggctgacacggcgagtgagctgttatgggtcctttccctattcactaaatttggcca 79406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 88 - 279
Target Start/End: Original strand, 79040 - 79232
Alignment:
Q  88 ctccaatacttgaatcttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcactta 187  Q
    |||||| ||||||  ||||||| |||||||||| || ||| ||||||||||||||||||||||||||| ||  ||||||||| | ||||||||||||| |    
T  79040 ctccaacacttgagccttactctcctagacattgccttcaacacaaacaaactcgcccaattcatgcaaaactccagaacggtgtattggactgcactca 79139  T
Q  188 aaagagtgctcagacac-ttggcgggttcctgtgacaaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgcg 279  Q
    |||||||||||  | || ||||||||||||||||||||||| |||||||| |||||||| | |||| |||||||||| |||||||| ||||||    
T  79140 aaagagtgctcctatactttggcgggttcctgtgacaaaggtgtcttcatttcgacgaccgacccattaaatctccatgcctactcagatgcg 79232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 260286 - 260217
Alignment:
Q  15 tatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||||||    
T  260286 tatgaagaaatatgcaaagacttagtcaaataaataaaatccttgtgtgttagtatttcttgcaccaata 260217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 7961781 - 7961854
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||||||||||||||||||||||  || |||||||||||||||||||||||||| |||||| ||||||||||||    
T  7961781 ataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaata 7961854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 1103162 - 1103215
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgt 64  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  1103162 ataatatgaagaaatatgtaaagacttggccatataaataaaagccttgtgtgt 1103215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 11269961 - 11270034
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||||||||||||||||  |||   || |||||||||||||||||||||||||| ||||||| |||||||||||    
T  11269961 ataatatgaagaaatataaaaaagtttggtcatataaataaaagccttgtgtgttagtattagttgcaccaata 11270034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 1716758 - 1716681
Alignment:
Q  7 tcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    ||||| |||||||| ||||||| ||||||||   |||||||||||| | ||||||||| | |||| |||||| |||||    
T  1716758 tcgaagaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgcatcaata 1716681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 10128507 - 10128578
Alignment:
Q  13 aatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||| ||||||||||||    
T  10128507 aatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaata 10128578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 8761298 - 8761225
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttag-tcatataaataaaagccttgtgtgtcagtattacttgcaccaat 83  Q
    |||||||||||||||||||||| |||| | ||||||||||||||| ||||||||| |||||| |||||||||||    
T  8761298 ataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaat 8761225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 37965606 - 37965532
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaag-ccttgtgtgtcagtattacttgcaccaata 84  Q
    ||||||||||||||||||||||||||| |  ||||||||||||| | |||||||| |||||| ||||||||||||    
T  37965606 ataatatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgttagtatttcttgcaccaata 37965532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 27272575 - 27272648
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||||||||||||||||||||||  || |||||||||||||||| ||||||||| |||||| ||||||||||||    
T  27272575 ataatatgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaata 27272648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 53469778 - 53469713
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttg 76  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||| ||||    
T  53469778 ataatatgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttg 53469713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 10395972 - 10396040
Alignment:
Q  16 atgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||||||||||||||||||||  | |||||||||||||||||||||||| |||||| |||||| |||||    
T  10395972 atgaagaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtatttcttgcatcaata 10396040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 29235244 - 29235173
Alignment:
Q  14 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagt-attacttgcaccaata 84  Q
    ||||||| |||||||||||||||| | |||||||||||| ||||||||||| ||| ||| ||||||||||||    
T  29235244 atatgaaaaaatatgcaaagacttggccatataaataaaggccttgtgtgttagtaatttcttgcaccaata 29235173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 13816943 - 13816988
Alignment:
Q  7 tcgaataatatgaagaaatatgcaaagacttagtcatataaataaa 52  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  13816943 tcgaagaatatgaagaaatatgcgaagacttggtcatataaataaa 13816988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 53472665 - 53472595
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaat 83  Q
    |||||| |||||||||||||||||||| | ||||||||||||||  |||||||| |||||| | |||||||||    
T  53472665 ataatacgaagaaatatgcaaagactt-gccatataaataaaag-tttgtgtgttagtatttcatgcaccaat 53472595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 21206356 - 21206414
Alignment:
Q  13 aatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtatt 71  Q
    |||| |||||||||| ||||| ||| |||||||||||||||||| ||||| | ||||||    
T  21206356 aatacgaagaaatatacaaaggcttggtcatataaataaaagccatgtgtattagtatt 21206414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 32015166 - 32015240
Alignment:
Q  10 aataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    ||||||| ||||| |||||||||||||| |  | ||||||||| |  |||||||| |||||| ||||||||||||    
T  32015166 aataataggaagatatatgcaaagacttggcaacataaataaaggttttgtgtgttagtatttcttgcaccaata 32015240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 31141410 - 31141481
Alignment:
Q  13 aatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||| ||||||||||||||||| |||| |||||||||||||| |||| |||| |||||| ||| ||||||||    
T  31141410 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttacaccaata 31141481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 25889628 - 25889701
Alignment:
Q  11 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    |||| |||||||  |||||||||  || |||||||||||||||| ||||| ||| |||||| ||||||||||||    
T  25889628 ataacatgaagagttatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcaccaata 25889701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 30046435 - 30046489
Alignment:
Q  22 aaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttg 76  Q
    ||||||||||||||||   ||||||||||||||| |||||||| |||||| ||||    
T  30046435 aaatatgcaaagacttgaccatataaataaaagctttgtgtgttagtatttcttg 30046489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 42001905 - 42001945
Alignment:
Q  44 ataaataaaagccttgtgtgtcagtattacttgcaccaata 84  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  42001905 ataaataaaagtcttgtgtgttagtaatacttgcaccaata 42001945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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