View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_41 (Length: 284)
Name: NF0735_low_41
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 24358338 - 24358491
Alignment:
| Q |
3 |
tcaatggtgaaatttggtttggaaagggttggaaactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttc |
102 |
Q |
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| T |
24358338 |
tcaatggcgagatttggtttgaaaagggttggaaatattttactgaaaattactctcttggacatggctctttggttgtgtttgaatataaaagaacttc |
24358437 |
T |
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| Q |
103 |
catgtttgatgtacacatatttgaccggaatgcagtagaaatagattattcttc |
156 |
Q |
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| T |
24358438 |
caagtttgatgtacacatttttggccggaatgcagtagaaatagattattcttc |
24358491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 24313841 - 24313994
Alignment:
| Q |
3 |
tcaatggtgaaatttggtttggaaagggttggaaactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttc |
102 |
Q |
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| T |
24313841 |
tcaatggtgagatttggtttgaaaggggttggaaattttttactgaaaattactctcttggacatgggtgtttggtaatgttcaaatataaaggaacttc |
24313940 |
T |
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| Q |
103 |
catgtttgatgtacacatatttgaccggaatgcagtagaaatagattattcttc |
156 |
Q |
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| T |
24313941 |
aaagtttgatgtactcatacttgaccagaatgcactagaaatagattattcttc |
24313994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 24344407 - 24344548
Alignment:
| Q |
6 |
atggtgaaatttggtttggaaagggttggaaactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttccat |
105 |
Q |
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| T |
24344407 |
atggtgagatttggtttgaaaagggttggaaatattttactgaaaattactctcttggacatggctctttggtggtgtttgaatataaaggaacttcgaa |
24344506 |
T |
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| Q |
106 |
gtttgatgtacacatatttgaccggaatgcagtagaaataga |
147 |
Q |
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| T |
24344507 |
atttgatgtagtaatacttggtcggaatgcagtagaaataga |
24344548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 151
Target Start/End: Complemental strand, 24364956 - 24364808
Alignment:
| Q |
3 |
tcaatggtgaaatttggtttggaaagggttggaaactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttc |
102 |
Q |
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||||||| || || ||||||| ||||||||||||| |||||| |||||||||||||||| |||||||| ||||||| ||||||||||| ||||||||| |
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| T |
24364956 |
tcaatggcgagatgtggtttgaaaagggttggaaaacttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttc |
24364857 |
T |
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| Q |
103 |
catgtttgatgtacacatatttgaccggaatgcagtagaaatagattat |
151 |
Q |
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| T |
24364856 |
caagtttgatgtagtaatacttggccagaatgcagtagaaatagattat |
24364808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 24354676 - 24354820
Alignment:
| Q |
3 |
tcaatggtgaaatttggtttggaaagggttggaaactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttc |
102 |
Q |
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||||||| || |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||| ||||| |||| ||| |
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| T |
24354676 |
tcaatggagagatttggtttgaaaagggttggaaatattttattgaaaattactctcttggacatggttgtttggtggtgttcaaatataaaggagattc |
24354775 |
T |
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| Q |
103 |
catgtttgatgtacacatatttgaccggaatgcagtagaaataga |
147 |
Q |
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| T |
24354776 |
aaagtttgatgtacacatacttggccagaatgcagtagaaataga |
24354820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 24369691 - 24369803
Alignment:
| Q |
3 |
tcaatggtgaaatttggtttggaaagggttggaaactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttc |
102 |
Q |
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|||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||||||||| |||||||| |
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| T |
24369691 |
tcaatggtgagatttggtttgaaaagggttggaaaacttttactgaaaattactctcttggacatggttgcttggtggtgtttgaatataaaggaacttt |
24369790 |
T |
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| Q |
103 |
catgtttgatgta |
115 |
Q |
| |
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|| |||||||||| |
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| T |
24369791 |
caagtttgatgta |
24369803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 24351591 - 24351704
Alignment:
| Q |
3 |
tcaatggtgaaatttggtttggaaagggttggaaactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttc |
102 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||| |||||| | ||||||||||||| ||||| ||||||||| |
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| T |
24351591 |
tcaatggtgagatttggtttgaaaagggttggaaacattttactgaaaattactctctacaacatggatgtttggtggtgtttaaatataaaggaacttc |
24351690 |
T |
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| Q |
103 |
catgtttgatgtac |
116 |
Q |
| |
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| T |
24351691 |
caagtttgatgtac |
24351704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 24362029 - 24362176
Alignment:
| Q |
3 |
tcaatggtgaaatttggtttggaaagggttggaaactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatat---ggaggaac |
99 |
Q |
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|||||||||| |||||||| | ||||||||||||| |||||| ||||||||||||||||||||||| | ||||||| ||||| | ||| | |||||| |
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| T |
24362029 |
tcaatggtgagatttggttcgaaaagggttggaaaacttttactgaaaattactctcttggacatgggtttttggtgttgtttaattatgaagaaggaac |
24362128 |
T |
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| Q |
100 |
ttccatgtttgatgtacacatatttgaccggaatgcagtagaaataga |
147 |
Q |
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||| | ||| |||||||||| ||| | |||||||||||||||||| |
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| T |
24362129 |
ttctaagttccttgtacacatacttggcaagaatgcagtagaaataga |
24362176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 24364727 - 24364689
Alignment:
| Q |
232 |
atggcttaatcggaagaaggctagacaaagatcgccttt |
270 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
24364727 |
atggcttaatcggaagaaggctagacaaagatcaccttt |
24364689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 24369920 - 24369958
Alignment:
| Q |
232 |
atggcttaatcggaagaaggctagacaaagatcgccttt |
270 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
24369920 |
atggcttaatcggaagaaggctagacaaagatcaccttt |
24369958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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