View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_43 (Length: 276)
Name: NF0735_low_43
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 39080758 - 39080906
Alignment:
| Q |
1 |
tgtattaggttcctaataagctttaaatatatattatatccttgtatatagttgtatcactgatcatcatcaattttaatataatttttcttgagttcta |
100 |
Q |
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| T |
39080758 |
tgtattatgttcctaataagctctaaatatatattatatccttgtatatagttgtatcactgatcattatcaattttaatataatttttcttgagttcta |
39080857 |
T |
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| Q |
101 |
ccctcaattctcaatctctttaaatgatttcatcccatttcacatctct |
149 |
Q |
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| T |
39080858 |
ccctcaattctcaatctctttaaatgatttcatcccatttcacatctct |
39080906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 39090169 - 39090269
Alignment:
| Q |
47 |
tatagttgtatcactgatcatcatcaattttaatataatttttcttgagttctaccctcaattctcaatctctttaaatgatttcatcccatttcacatc |
146 |
Q |
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||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||| || |
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| T |
39090169 |
tatagttgtatcact--tcatcatcaatttcaatatactttttcttgagttccaccctcaactctcaatctctttaaatgatttcctaccatttcacctc |
39090266 |
T |
|
| Q |
147 |
tct |
149 |
Q |
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||| |
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| T |
39090267 |
tct |
39090269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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