View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_5 (Length: 540)
Name: NF0735_low_5
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Original strand, 39553836 - 39554265
Alignment:
| Q |
11 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553836 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
39553935 |
T |
|
| Q |
111 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagcc |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553936 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagcc |
39554035 |
T |
|
| Q |
211 |
actactaaaccaccacatttcatccaagttgcctgcatagtaacgatgataattaaaacactataaataatactaataaatttgtagacatgttgcattg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554036 |
actactaaaccaccacatttcatccaagttgcctgcatagtaacaatgataattaaaacactataaataatactaataaatttgtagacatgttgcattg |
39554135 |
T |
|
| Q |
311 |
atttttaaatgaataatattttacctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattg |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554136 |
atttttaaatgaataatattttacctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattg |
39554235 |
T |
|
| Q |
411 |
agagattgtaactcaacatcagcaaaagct |
440 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
39554236 |
agagattgtaactcaacatcagcaaaagct |
39554265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 39543817 - 39544078
Alignment:
| Q |
11 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
110 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| |
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| T |
39543817 |
cagagatggggacatacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcattgttgggat |
39543916 |
T |
|
| Q |
111 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagcc |
210 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |
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| T |
39543917 |
caaagacttgttattgttgggtcgagctatctcggcccatgatacaaggaacatgtttgcagaatatgcgtccgctatacgatggtcaaaagtgcaagcc |
39544016 |
T |
|
| Q |
211 |
actactaaaccaccacatttcatccaagttgcctgcatagtaacgatgataattaaaacact |
272 |
Q |
| |
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|||||||| ||||||||||||||||| |||| |||||||||||| |||| ||||||||||| |
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| T |
39544017 |
actactaatccaccacatttcatccatgttgtctgcatagtaacaatgacgattaaaacact |
39544078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 39586948 - 39587182
Alignment:
| Q |
13 |
gagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggatca |
112 |
Q |
| |
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|||||||||| ||||||||||| | |||||||||||||||||||||| ||| |||||||||||| |||| | ||||||||||||| ||||||||||||| |
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| T |
39586948 |
gagatggggatgtacatgtcatagagtgaaggatggatggaaggtgggtgtcttggggtcagaagggacctttgaaaacaaggttgtgttgttgggatca |
39587047 |
T |
|
| Q |
113 |
aagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccac |
212 |
Q |
| |
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|||||||||||| | | || ||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||| |||| ||||| |
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| T |
39587048 |
aagacttgttattgctcgatcgggctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccac |
39587147 |
T |
|
| Q |
213 |
tactaaaccaccacatttcatccaagttgcctgca |
247 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
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|
| T |
39587148 |
tactaacccaccacatttcatccaagttgcctgca |
39587182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 333 - 440
Target Start/End: Original strand, 39544844 - 39544951
Alignment:
| Q |
333 |
acctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
432 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544844 |
acctgagcagcaagcacaccatgtttcttctttggaacaagcttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
39544943 |
T |
|
| Q |
433 |
caaaagct |
440 |
Q |
| |
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|||||||| |
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|
| T |
39544944 |
caaaagct |
39544951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 333 - 440
Target Start/End: Original strand, 39587275 - 39587382
Alignment:
| Q |
333 |
acctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
432 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||| ||||| |||||||||| ||||||||| ||||||||||||| |
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| T |
39587275 |
acctgaacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatcag |
39587374 |
T |
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| Q |
433 |
caaaagct |
440 |
Q |
| |
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||| |||| |
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| T |
39587375 |
caacagct |
39587382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 17503782 - 17503893
Alignment:
| Q |
139 |
atctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttcatccaag |
238 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| |||||||||| |||||||| || | ||| |
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| T |
17503782 |
atctcggcccatgatactaggaacatgtttgttgaatatgcatctgctatgcgatgatcaaatgtgcatgccactactatcccaccacactttaatgaag |
17503881 |
T |
|
| Q |
239 |
ttgcctgcatag |
250 |
Q |
| |
|
|||||||||||| |
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|
| T |
17503882 |
ttgcctgcatag |
17503893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 17475654 - 17475735
Alignment:
| Q |
134 |
gagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactac |
215 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||| || |||||||| ||||| ||||| ||||| ||||| |||||||| |
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|
| T |
17475654 |
gagccatctcggcccatgatactaagaacatgtttgttgagtaggcatctgctatgcgatgatcaaatgtgcatgccactac |
17475735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 440
Target Start/End: Original strand, 17484768 - 17484863
Alignment:
| Q |
345 |
agcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagct |
440 |
Q |
| |
|
||||| ||||| |||||||| ||||||| || |||||||||| |||||| || ||||| |||||||| |||| | |||||||||||||| |||| |
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|
| T |
17484768 |
agcacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaattgaggcattgaagctcaacatcagcaacagct |
17484863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 440
Target Start/End: Original strand, 17507043 - 17507138
Alignment:
| Q |
345 |
agcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagct |
440 |
Q |
| |
|
||||| ||||| |||||||| ||||||| || |||||||||| |||||| || ||||| |||||||| |||| | ||||||||||||| |||| |
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|
| T |
17507043 |
agcacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaattgaggcattgaagttcaacatcagcaacagct |
17507138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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