View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_52 (Length: 256)
Name: NF0735_low_52
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 30079236 - 30079462
Alignment:
| Q |
12 |
cgaataatatgtccatgcttgtggtagagtcgagtccatggaatgcaaatgattttgggattccttatcctacatatttccaccctgcaaaagatgctga |
111 |
Q |
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| T |
30079236 |
cgaagaatatgtccatgcttgtggtagagtcgagtccatggaatgcaaatgattttgggattccttatcctacatacttccaccctgcaaaagatgctga |
30079335 |
T |
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| Q |
112 |
tgtgttcaattggcaggacagaatgaggcatttagagaggaagtggctcttctcatttgctggagctccccgtcctgacaatgccaaatcaatcaggggt |
211 |
Q |
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| T |
30079336 |
tgtgttcaattggcaggacagaatgaggcatttagagaggaagtggcttttctcatttgctggagctccccgtcctgacaatgccaaatcaatcaggggt |
30079435 |
T |
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| Q |
212 |
cagttaattgagcaatgcagaagttca |
238 |
Q |
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| T |
30079436 |
cagttaattgagcaatgcagaagttca |
30079462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 39485906 - 39485686
Alignment:
| Q |
17 |
aatatgtccatgcttgtggtagagtcgagtccatggaatgcaaatgattttgggattccttatcctacatatttccaccctgcaaaagatgctgatgtgt |
116 |
Q |
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|||||||| |||||||| || || || ||||| |||||||| ||||||||||||||||||||||| || |||||||| || || |||||| ||||| | |
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| T |
39485906 |
aatatgtctatgcttgttgttgaatctagtccttggaatgctaatgattttgggattccttatccgacgtatttccatcccgcgaaagataaggatgttt |
39485807 |
T |
|
| Q |
117 |
tcaattggcaggacagaatgaggcatttagagaggaagtggctcttctcatttgctggagctccccgtcctgacaatgccaaatcaatcaggggtcagtt |
216 |
Q |
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| T |
39485806 |
ttgtttggcaggagaggatgagaaggttggagaggaaatggcttttctcttttgcgggtgcacctcgtcctggtaatgcaaaatcgattaggggtcagat |
39485707 |
T |
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| Q |
217 |
aattgagcaatgcagaagttc |
237 |
Q |
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|||||||||||| || ||||| |
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| T |
39485706 |
aattgagcaatgtaggagttc |
39485686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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