View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0735_low_57 (Length: 251)
Name: NF0735_low_57
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_57 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 47829344 - 47829116
Alignment:
| Q |
13 |
aatataatcggtgtgtgagtttggggagaagagtagtgttgattaattccgttctcacttctattctcatattctattggtgtgcaaagcactcaaagcc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47829344 |
aatataatcggtgtgtgagtttggggagaagagtagtgttgattaattccgttctcacttctattctcatattctattggtgtgcaaagcactcaaagcc |
47829245 |
T |
|
| Q |
113 |
atagaaccaaataatacacaagcaaattacgttttattttctttccataaacagtagtagatacaatacaatcaaattaaaatacataaactaagcccct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47829244 |
atagaaccaaataatacacaagcaaattacgttttattttctttccataaacagtagtagatacaatacaatcaaattaaaatacataaactaagcccct |
47829145 |
T |
|
| Q |
213 |
ggaaacattcattaatgttaacaataata |
241 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47829144 |
ggaaacattcattaatgttaacaataata |
47829116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4218 times since January 2019
Visitors: 4829