View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_6 (Length: 503)
Name: NF0735_low_6
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 37862844 - 37862329
Alignment:
| Q |
1 |
taaagccagagaaaatgcaagccactcgacatgtacttagcgaatatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgagatgaggatgaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37862844 |
taaagccagagaaaatgcaagccactcgacatgtacttagcgaatatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgagatgaggatgaa |
37862745 |
T |
|
| Q |
101 |
atcaaaagaagacggacttgccacaaccggcgagggacttgaatggggtgtgcttttcggttttggtcccggactcacaatcgagactgttgtgctccgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37862744 |
atcaaaagaagacggacttgccacaaccggcgagggactcgaatggggtgtgcttttcggttttggtcccggactcacaatcgagactgttgtgctccgt |
37862645 |
T |
|
| Q |
201 |
agtgtgtccacctaaatcctcgcatcttactaagtcaacaaattctattttccc---------------------ccaaaatcaaatgtattctttcttt |
279 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37862644 |
agtgtgtccacctaaatcctcacatcttactaagtcaacaaattctattttcccccaagctctttaccttttcgcccaaaatcaaatgtattctttcttt |
37862545 |
T |
|
| Q |
280 |
ctttgtatttctgttcctcattgattacttttcacatgtttcctatgcctataattaatcactattatcactgcatgatataaatctttgattttctgtt |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
37862544 |
ctttgtatttctgttcctcattgattactttccacatgtttcctatgcctataattaatcacgattatcactgcgtgatataaatctttgattttctgtt |
37862445 |
T |
|
| Q |
380 |
atctgataaaatcttcagatacaaggaatgtataaaatcttcagatataaggaatgtatcaacaagattgactcctttcatttcatattgttaatcgcgt |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37862444 |
atctgataaaatcttcagatacaaggaatgtataaaatcttcagatataaggaatgtatcaacaagattgactcctttcatttcatattgttaatcgcgt |
37862345 |
T |
|
| Q |
480 |
cattgaattctctgct |
495 |
Q |
| |
|
|||||||||||||||| |
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| T |
37862344 |
cattgaattctctgct |
37862329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 39030739 - 39030988
Alignment:
| Q |
1 |
taaagccagagaaaatgcaagccactcgacatgtacttagcgaatatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgagatgaggatgaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| | | ||| ||||||| |||||||||||||||| ||| |
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| T |
39030739 |
taaagccagagaaaatgcaagccactcggcatgtacttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgagatgaggaggaa |
39030838 |
T |
|
| Q |
101 |
atcaaaagaagacggacttgccacaaccggcgagggacttgaatggggtgtgcttttcggttttggtcccggactcacaatcgagactgttgtgctccgt |
200 |
Q |
| |
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||||||||||| ||||||| |||||| || || |||||||||||||| |||||||| ||||||| || |||||||| |||||||||||||||||| | |
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| T |
39030839 |
gtcaaaagaagaaggacttggcacaacaggagaaggacttgaatggggcgtgcttttaagttttggacctggactcactgtcgagactgttgtgctccat |
39030938 |
T |
|
| Q |
201 |
agtgtgtccacctaaatcctcgcatcttactaagtcaacaaattctattt |
250 |
Q |
| |
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|||||| |||||||||||||| ||| |||| ||| |||||| |||||||| |
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| T |
39030939 |
agtgtggccacctaaatcctcacattttaccaaggcaacaagttctattt |
39030988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 37858818 - 37858621
Alignment:
| Q |
1 |
taaagccagagaaaatgcaagccactcgacatgtacttagcgaatatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgagatgaggatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| |
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| T |
37858818 |
taaagccagagaaaatgcaagccactcgacatgtgcttagcgagtatggtaacatgtcaagtgcatgtgtgttattcatcttggatgagatgaggaggaa |
37858719 |
T |
|
| Q |
101 |
atcaaaagaagacggacttgccacaaccggcgagggacttgaatggggtgtgcttttcggttttggtcccggactcacaatcgagactgttgtgctcc |
198 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || ||||||||||| || || ||||| || ||||||||||| | |||||||| ||||||| |
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| T |
37858718 |
gtcaaaagaagacggacttgccacaacaggcgaggggctggaatggggtgtcctatttggtttcgggcccggactcactgttgagactgtagtgctcc |
37858621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 40421227 - 40421178
Alignment:
| Q |
45 |
tatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgagatgag |
94 |
Q |
| |
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||||| |||||||||||||| |||||| |||| || |||||||||||||| |
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| T |
40421227 |
tatggaaacatgtcaagtgcttgtgtgatatttatattggatgagatgag |
40421178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 1478699 - 1478769
Alignment:
| Q |
33 |
gtacttagcgaatatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgagatgaggatgaaatc |
103 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||| | |||||||||||||||||||| | |||||| |
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| T |
1478699 |
gtacttagtgaatatggtaacatgtcaagcgcatgtgtattgttcatcttggatgagatgagaaagaaatc |
1478769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 1482879 - 1482952
Alignment:
| Q |
19 |
aagccactcgacatgtacttagcgaatatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgagatg |
92 |
Q |
| |
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|||||||| || | |||||||| ||||||||||||||||||||||| ||||| | || ||||| ||||||||| |
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| T |
1482879 |
aagccactagagaagtacttagtgaatatggtaacatgtcaagtgcatgtgtattgtttatcttagatgagatg |
1482952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 203
Target Start/End: Original strand, 1487370 - 1487540
Alignment:
| Q |
33 |
gtacttagcgaatatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgagatgaggatgaaatcaaaagaagacggacttgccacaaccggcg |
132 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| | || || |||||||| ||||| | || |||| |||| ||||||| || || || | |
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| T |
1487370 |
gtacttagtgaatatggtaacatgtcaagtgcttgtgtattgtttatattggatgaaatgagaaagagatcagctcaagagggacttgagaccacaggag |
1487469 |
T |
|
| Q |
133 |
agggacttgaatggggtgtgcttttcggttttggtcccggactcacaatcgagactgttgtgctccgtagt |
203 |
Q |
| |
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| |||||| ||||||| ||| | ||||| ||||| || ||||| || || || |||||||| |||| |||| |
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| T |
1487470 |
aaggacttaaatggggagtgttgttcggctttggacctggacttaccattgaaactgttgttctccatagt |
1487540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 1509816 - 1509884
Alignment:
| Q |
36 |
cttagcgaatatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgagatgaggatgaaatca |
104 |
Q |
| |
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||||| ||||||||||| ||||||||||| ||||| | |||||||| || |||||||| | ||||||| |
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| T |
1509816 |
cttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatca |
1509884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 24163209 - 24163151
Alignment:
| Q |
36 |
cttagcgaatatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgagatgag |
94 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
24163209 |
cttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttagatgagatgag |
24163151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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