View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_62 (Length: 244)
Name: NF0735_low_62
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 43259109 - 43259217
Alignment:
| Q |
1 |
gtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtttacccatggagccaggattgtaccaatcttggaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43259109 |
gtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggagccaggattgtaccaatcttggaa |
43259208 |
T |
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| Q |
101 |
tcttctgtg |
109 |
Q |
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||||||||| |
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| T |
43259209 |
tcttctgtg |
43259217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 43255843 - 43255951
Alignment:
| Q |
1 |
gtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtttacccatggagccaggattgtaccaatcttggaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
43255843 |
gtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggaaccaggattgtaccaatcttggag |
43255942 |
T |
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| Q |
101 |
tcttctgtg |
109 |
Q |
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||||||||| |
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| T |
43255943 |
tcttctgtg |
43255951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 43247846 - 43247918
Alignment:
| Q |
1 |
gtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtttacccat |
73 |
Q |
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|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
43247846 |
gtccaccagggtatgctggttcaccggaaccgccaagacctttctcaagtcctaaaaagtattgttttcccat |
43247918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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