View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_64 (Length: 243)
Name: NF0735_low_64
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 39553980 - 39553836
Alignment:
| Q |
89 |
gtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttctgaccccacgacgcccac |
188 |
Q |
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| T |
39553980 |
gtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttctgaccccacgacgcccac |
39553881 |
T |
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| Q |
189 |
cttccatccatccttcaatttatgacatgtatgtccccatctctg |
233 |
Q |
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| T |
39553880 |
cttccatccatccttcaatttatgacatgtatgtccccatctctg |
39553836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 39543961 - 39543817
Alignment:
| Q |
89 |
gtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttctgaccccacgacgcccac |
188 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
39543961 |
gtatcatgggccgagatagctcgacccaacaataacaagtctttgatcccaacaatgcaaccttgttttagacggtcacttatgaccccacgacgcccac |
39543862 |
T |
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| Q |
189 |
cttccatccatccttcaatttatgacatgtatgtccccatctctg |
233 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
39543861 |
cttccatacatccttcactttatgacatgtatgtccccatctctg |
39543817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 39587090 - 39586948
Alignment:
| Q |
89 |
gtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttctgaccccacgacgcccac |
188 |
Q |
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|||||||||||||||||||| || | | ||||||||||||||||||||||||| ||||||||||||| | |||| |||||||||||| ||| ||||| |
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| T |
39587090 |
gtatcatgggccgagatagcccgatcgagcaataacaagtctttgatcccaacaacacaaccttgttttcaaaggtcccttctgaccccaagacacccac |
39586991 |
T |
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| Q |
189 |
cttccatccatccttcaatttatgacatgtatgtccccatctc |
231 |
Q |
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||||||||||||||||| | ||||||||||| |||||||||| |
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| T |
39586990 |
cttccatccatccttcactctatgacatgtacatccccatctc |
39586948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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