View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0735_low_9 (Length: 491)
Name: NF0735_low_9
Description: NF0735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0735_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 98 - 481
Target Start/End: Complemental strand, 7723868 - 7723485
Alignment:
| Q |
98 |
gcatcttctggttctgtggttgtacgtaccatgagttgttgttgttgt---gatggtggtggtggttatacatcgaagctgactccattacgccaataga |
194 |
Q |
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| T |
7723868 |
gcatcttctggttctgtggttgtacgtaccatgagttgttgttgttgttgtgatggtggtggtggttatacatcgaagctgactccattacgccaataga |
7723769 |
T |
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| Q |
195 |
tggcgctgtcgctgtgccggcggcagaagttgctcttctctcttccttcttgaatctgatcccacatgcattgcatagtgactgtaattcccattcaaat |
294 |
Q |
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| T |
7723768 |
tggcgctgtcgctgtgccagcggcagaagttgctcttctctcttccttcttgaatctgatcccacatgcattgcataatgactgtaatt-ccattcaaat |
7723670 |
T |
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| Q |
295 |
tgaaactatcaaaagattgaaataaagttatatatttggaatgtatatatttagagtannnnnnnnacctttgggcctcgagggccgttcctccaaagcg |
394 |
Q |
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| T |
7723669 |
tgaaactatcaaaagattgaaataaagttatata-tagttatat-tatatttagagtattttttttacctttgggcctcgagggccgttcctccaaagcg |
7723572 |
T |
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| Q |
395 |
gtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgttgttattattggtacttgcacgtgttgcctttg |
481 |
Q |
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| T |
7723571 |
gtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgttgttattattggtacttgcacgtgttgcctttg |
7723485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 32956020 - 32956086
Alignment:
| Q |
226 |
gctcttctctcttccttcttgaatctgatcccacatgcattgcatagtgactgtaattcccattcaa |
292 |
Q |
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| T |
32956020 |
gctcttctctcttccttcttgtatctaatcccacaagcattgcatagtgactgcaatttcaattcaa |
32956086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 449
Target Start/End: Original strand, 32956322 - 32956410
Alignment:
| Q |
361 |
acctttgggcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgtt |
449 |
Q |
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| T |
32956322 |
accttagggccacgaggaccattcctccaaaggggtgtagaagtggagtcacagctagcacaacgacgagcaagaagagaatcattgtt |
32956410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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