View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0736_high_1 (Length: 514)
Name: NF0736_high_1
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0736_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Complemental strand, 43817983 - 43817515
Alignment:
| Q |
17 |
tatcatgttgatgaaaccaaaacgaagtaacaatccctttattgaatccaaataatcatatcttagttttcattatttctcatttctccaacatagaaaa |
116 |
Q |
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| T |
43817983 |
tatcatgttgatgaaaccaaaacgaagtaacaatccctttattgaatccaaataatcatatcttagttttcattatttctcatttctccaacatagaaaa |
43817884 |
T |
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| Q |
117 |
aagaaacaccaatcatacatttcctaatctgatttgttttcattaaaaacgtgacgattagggaattgaaattgaaatagatacatagaagaaatgaaaa |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43817883 |
aagaaacaccaatcattcatttcctaatctgatttgttttcattaaaaacgtgacgattagggaattgaaattgaaatagatacatagaagaaatgaaaa |
43817784 |
T |
|
| Q |
217 |
atttccacattttatgtggaatcgtaatatcctcgttgttatcatatgtgacatgctttgacggtgcaatacacgaagctggtctaacatgcgggactta |
316 |
Q |
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| T |
43817783 |
atttccacattttatgtggaatcgtaatatcctcgttgttatcatatgtgacatgctttgacggtgcaatacacgaagctggtctaacatgcgggactta |
43817684 |
T |
|
| Q |
317 |
tcaataccctcatgatggtaacaatactaacaatcacaagttgaagcaaaacttgatggttgtaatggacgcggtctcatttcaggtgaaacagcagggg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43817683 |
tcaataccctcatgatggtaacaatactaacaatcacaagttgaagcaaaacttgatggttgtaatggacgcggtctcatttcaggtgaaacagcagggg |
43817584 |
T |
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| Q |
417 |
tggggagcacaaacattagttggtaattggcatccaatgtatgcattaggccaatgtcaacgcgatctt |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43817583 |
tggggagcacaaacattagttggtaattggcatccaatgtatgcattaggccaatgtcaacgcgatctt |
43817515 |
T |
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