View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0736_high_11 (Length: 267)

Name: NF0736_high_11
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0736_high_11
NF0736_high_11
[»] chr8 (19 HSPs)
chr8 (48-240)||(19173528-19173715)
chr8 (43-117)||(19458515-19458589)
chr8 (43-117)||(19556193-19556267)
chr8 (37-114)||(19389950-19390027)
chr8 (37-117)||(19470208-19470288)
chr8 (37-117)||(19541132-19541212)
chr8 (37-117)||(19591486-19591566)
chr8 (37-115)||(19504747-19504825)
chr8 (48-117)||(19375952-19376021)
chr8 (37-117)||(19344504-19344584)
chr8 (37-117)||(19373512-19373592)
chr8 (48-117)||(19354823-19354892)
chr8 (48-117)||(19404086-19404155)
chr8 (48-117)||(19410142-19410211)
chr8 (48-117)||(19457161-19457230)
chr8 (48-117)||(19523848-19523917)
chr8 (48-117)||(19447868-19447937)
chr8 (48-117)||(19533139-19533208)
chr8 (48-117)||(19336800-19336869)
[»] chr1 (1 HSPs)
chr1 (37-118)||(36315332-36315413)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 48 - 240
Target Start/End: Original strand, 19173528 - 19173715
Alignment:
Q  48 tccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaataacttcaattcttgcaatctgcacttcctaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19173528 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatgattgatgaataacttcaattcttgcaatctgcacttcctaa 19173627  T
Q  148 ctttggaaacaaaattttatacaagttattatattttgggcccttatcagagttaattctggttcacatgattagtcacaaacctttaccttt 240  Q
    ||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19173628 ctttggaaacaaaattttatacaagt-----tattttgggcccttatcagagttaattctggttcacatgattagtcacaaacctttaccttt 19173715  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 19458515 - 19458589
Alignment:
Q  43 agtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  19458515 agtaatccaccacaaccataagtatatcaatacaacttgtttctttatttccaagcttatcatgattgatgaata 19458589  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 19556193 - 19556267
Alignment:
Q  43 agtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  19556193 agtaatccaccacaaccataagtatatcaatacaacttgtttctttatttccaagcttatcatgattgatgaata 19556267  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 19390027 - 19389950
Alignment:
Q  37 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||    
T  19390027 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcatagcttatcatgattgatga 19389950  T

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Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 19470208 - 19470288
Alignment:
Q  37 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||  ||||||||||    
T  19470208 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaata 19470288  T

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Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 19541132 - 19541212
Alignment:
Q  37 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||  ||||||||||    
T  19541132 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaata 19541212  T

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Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 19591566 - 19591486
Alignment:
Q  37 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||  ||||||||||    
T  19591566 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaata 19591486  T

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Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 19504747 - 19504825
Alignment:
Q  37 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaa 115  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  19504747 agtagtagtactccaccacaaccataagtatatcaatacaacttgtttctttatttcgaaacttatcatgattgatgaa 19504825  T

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Target: chr8; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 19376021 - 19375952
Alignment:
Q  48 tccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19376021 tccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaata 19375952  T

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Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 19344584 - 19344504
Alignment:
Q  37 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||| || ||||||||    
T  19344584 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatcttaaagcttatcatgatcgatgaata 19344504  T

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Target: chr8; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 19373592 - 19373512
Alignment:
Q  37 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||| || ||||||||    
T  19373592 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatcttaaagcttatcatgatcgatgaata 19373512  T

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Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 19354892 - 19354823
Alignment:
Q  48 tccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  19354892 tccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatgattgatgaata 19354823  T

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Target: chr8; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 19404155 - 19404086
Alignment:
Q  48 tccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  19404155 tccaccacaaccataggtatatcaatacaacttgtttctttatttcaaaacttatcatcattgatgaata 19404086  T

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Target: chr8; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 19410211 - 19410142
Alignment:
Q  48 tccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  19410211 tccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaata 19410142  T

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Target: chr8; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 19457230 - 19457161
Alignment:
Q  48 tccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  19457230 tccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaata 19457161  T

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Target: chr8; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 19523848 - 19523917
Alignment:
Q  48 tccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  19523848 tccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaata 19523917  T

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Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 19447937 - 19447868
Alignment:
Q  48 tccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||| ||||||||||| ||| |||||||    
T  19447937 tccaccacaaccataggtatatcaatagatcttgtttctttatttcaaagcttatcatgattcatgaata 19447868  T

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Target: chr8; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 19533139 - 19533208
Alignment:
Q  48 tccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||| ||||||||||| ||| |||||||    
T  19533139 tccaccacaaccataggtatatcaatagatcttgtttctttatttcaaagcttatcatgattcatgaata 19533208  T

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Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 19336869 - 19336800
Alignment:
Q  48 tccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaata 117  Q
    ||||||||||||||||||||||| | |||| |||||| ||| |||  ||||||||||| |||||||||||    
T  19336869 tccaccacaaccataagtatatccaaacaatttgtttatttcttttaaagcttatcatgattgatgaata 19336800  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 36315332 - 36315413
Alignment:
Q  37 agtagaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcgaagcttatcatcattgatgaataa 118  Q
    ||||| |||| ||||||||||||||||||||||||| | || |||||||||||||   ||||||||||| ||  ||||||||    
T  36315332 agtagtagtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaataa 36315413  T

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