View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0736_high_12 (Length: 262)
Name: NF0736_high_12
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0736_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 48912579 - 48912812
Alignment:
| Q |
1 |
agaagccgtttcgtttagctttgctataaatgaaagaaaatgacataggtagccatcacagtacttggtttagacattttatcaaacacctaacatacta |
100 |
Q |
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| T |
48912579 |
agaagccgtttcgtttagctttgctataaatgaaagaaaatgacataggtagccatcacagtacttggtttagacattttatcaaacacctaacatacta |
48912678 |
T |
|
| Q |
101 |
ttttaagcacatattcagtaaaaaatgaaatatatatgaatttaaaaattgagcaattagctatttatttatgctattgaacaagggatttgtataacaa |
200 |
Q |
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| T |
48912679 |
ttttaagcacatattcagtaaaaaatgaagtatatatgaatttaaaaattgagcaattagctatttatttatgctattgaacaagggatttgtataacaa |
48912778 |
T |
|
| Q |
201 |
tgttgttctaaaagtaatgaacccagcaatacat |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
48912779 |
tgttgttctaaaagtaatgaacccagcaatacat |
48912812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 48923988 - 48924053
Alignment:
| Q |
1 |
agaagccgtttcgtttagctttgctataaatgaaagaaaatgacataggtagccatcacagtactt |
66 |
Q |
| |
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|||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |
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| T |
48923988 |
agaagctgttttgtttagctttgctgcaaatgaaagaaaatgacataggcagccatcacagaactt |
48924053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 48924222 - 48924250
Alignment:
| Q |
70 |
ttagacattttatcaaacacctaacatac |
98 |
Q |
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| T |
48924222 |
ttagacattttatcaaacacctaacatac |
48924250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 55424990 - 55424955
Alignment:
| Q |
13 |
gtttagctttgctataaatgaaagaaaatgacatag |
48 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
55424990 |
gtttagctttgctacaaatgaaagaaaatgacatag |
55424955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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