View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0736_high_3 (Length: 413)

Name: NF0736_high_3
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0736_high_3
NF0736_high_3
[»] chr4 (3 HSPs)
chr4 (30-397)||(38922780-38923147)
chr4 (30-94)||(38909157-38909221)
chr4 (179-273)||(5912650-5912743)
[»] chr7 (2 HSPs)
chr7 (130-229)||(33895470-33895568)
chr7 (146-230)||(38905210-38905293)
[»] chr1 (1 HSPs)
chr1 (333-393)||(24802585-24802644)
[»] chr6 (1 HSPs)
chr6 (180-248)||(32847507-32847574)
[»] chr5 (2 HSPs)
chr5 (174-266)||(29161131-29161222)
chr5 (135-204)||(8081818-8081888)
[»] chr3 (1 HSPs)
chr3 (169-236)||(32471640-32471706)


Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 30 - 397
Target Start/End: Original strand, 38922780 - 38923147
Alignment:
Q  30 caatagcatctccaaccactgatgctctatcagtctgcatttgaccaaaactgcccgttaatcatggtatcatcaaatagagattcaaatcgtgaaacgg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38922780 caatagcatctccaaccactgatgctctatcagtctgcatttgaccaaaactgcccgttaatcatggtatcatcaaatagagattcaaatcgtgaaacgg 38922879  T
Q  130 aaaatacattgccaataaaaatgtaatttttattaataaataagtgacataacaatattataaactgatatatcacatatgaaacctcaaaataattcaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38922880 aaaatacattgccaataaaaatgtaatttttattaataaataagtgacataacaatattataaactgatatatcacatatgaaacctcaaaataattcaa 38922979  T
Q  230 aattcaaaacatataacaattgacaacagaaaagtggctggttactcgattcacagataaaattatacattggttaaaaataaatcatagatgtttattg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38922980 aattcaaaacatataacaattgacaacagaaaagtggctggttactcgattcacagataaaattatacattggttaaaaataaatcatagatgtttattg 38923079  T
Q  330 ctgtttaccttggtgggacttggaatgagatccctcaagattttgtactttccattcaattgctccct 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38923080 ctgtttaccttggtgggacttggaatgagatccctcaagattttgtactttccattcaattgctccct 38923147  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 38909157 - 38909221
Alignment:
Q  30 caatagcatctccaaccactgatgctctatcagtctgcatttgaccaaaactgcccgttaatcat 94  Q
    |||||||||||||||||||||||||||| |||  ||||||| || ||||||||||||||||||||    
T  38909157 caatagcatctccaaccactgatgctctgtcatcctgcattagatcaaaactgcccgttaatcat 38909221  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 273
Target Start/End: Complemental strand, 5912743 - 5912650
Alignment:
Q  179 taacaatattataaactgatatatcacatatgaaacctcaaaataattcaaaattcaaaacatataacaattgacaacagaaaagtggctggtta 273  Q
    |||||| |||||||  |||||||| | ||||||| |||||||||||||||| |||||||  ||||| ||| |||||| ||||||| || ||||||    
T  5912743 taacaaaattataagatgatatattatatatgaa-cctcaaaataattcaagattcaaattatatatcaaatgacaaaagaaaaggggttggtta 5912650  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 33895568 - 33895470
Alignment:
Q  130 aaaatacattgccaataaaaatgtaatttttattaataaataagtgacataacaatattataaactgatatatcacatatgaaacctcaaaataattcaa 229  Q
    |||||||| | ||||||||||||||||||   | || ||| |||| ||||||||||||||||| ||||||||| | ||||| ||||| ||||||||||||    
T  33895568 aaaatacactaccaataaaaatgtaatttgagtgaaaaaacaagtaacataacaatattataagctgatatattatatatg-aaccttaaaataattcaa 33895470  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 38905210 - 38905293
Alignment:
Q  146 aaaaatgtaatttttattaataaataagtgacataacaatattataaactgatatatcacatatgaaacctcaaaataattcaaa 230  Q
    |||||| ||||||||||  | ||| |||||| | ||||| ||||||| ||||||| | | |||| ||||||||||||||||||||    
T  38905210 aaaaatttaatttttatataaaaacaagtgagagaacaaaattataagctgatatttgatatat-aaacctcaaaataattcaaa 38905293  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 24802644 - 24802585
Alignment:
Q  333 tttaccttggtgggacttggaatgagatccctcaagattttgtactttccattcaattgct 393  Q
    |||||||| |||||| | ||| |||||||||||||||||||| ||||||||||||||||||    
T  24802644 tttaccttagtgggattagga-tgagatccctcaagattttgcactttccattcaattgct 24802585  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 32847507 - 32847574
Alignment:
Q  180 aacaatattataaactgatatatcacatatgaaacctcaaaataattcaaaattcaaaacatataacaa 248  Q
    ||||| ||||||| ||||||||||| ||||||  |||||||||||||||| ||||||  ||||||||||    
T  32847507 aacaaaattataagctgatatatcatatatgag-cctcaaaataattcaagattcaagtcatataacaa 32847574  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 29161222 - 29161131
Alignment:
Q  174 tgacataacaatattataaactgatatatcacatatgaaacctcaaaataattcaaaattcaaaacatataacaattgacaacagaaaagtgg 266  Q
    ||||||||||| |||| || ||||||||||| ||||| ||||||||||||||||||  ||||   |||||  ||| |||||| ||||||||||    
T  29161222 tgacataacaaaattaaaagctgatatatcatatatg-aacctcaaaataattcaaggttcatgtcatatgtcaaatgacaaaagaaaagtgg 29161131  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 8081818 - 8081888
Alignment:
Q  135 acattgccaataaaaatgtaatttttat-taataaataagtgacataacaatattataaactgatatatca 204  Q
    ||||||| ||||||||||| |||||||  ||| |||||| ||||||||| | ||||||| |||||||||||    
T  8081818 acattgctaataaaaatgtcatttttaagtaaaaaataattgacataacgaaattataagctgatatatca 8081888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 32471706 - 32471640
Alignment:
Q  169 ataagtgacataacaatattataaactgatatatcacatatgaaacctcaaaataattcaaaattcaa 236  Q
    |||||||||||||||| |||||||  ||||||| || ||||| || ||||||||||||||| ||||||    
T  32471706 ataagtgacataacaaaattataagttgatatagcatatatg-aatctcaaaataattcaagattcaa 32471640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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