View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0736_high_4 (Length: 384)
Name: NF0736_high_4
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0736_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 19729422 - 19729777
Alignment:
| Q |
1 |
gtgtcactgatgaagattggtaaaaggaaacttaagctaagttgtgtaaaaccctgtgctgaagattgtttgacaaagtcagagataaatattgatgtgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19729422 |
gtgtcactgatgaagattggtaaaaggaaacttaagctaagttgtgtaaaaccctgtgctgaagattgtttgacaaagtcagagataaatattgacgtgt |
19729521 |
T |
|
| Q |
101 |
tgaaagaggtacggaactagaaactcattgaagaaaatgatttttaaaagaagtaaatagtattctttgttgattatatgttctagtctcatcattggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19729522 |
tgaaagaggtacggaactagaaactcattgaagaaaatgatttttaaatgaagtaaatagtattctctgttgattatatgttctagtctcatcattggtg |
19729621 |
T |
|
| Q |
201 |
atatagcagccttattgaacttgaaattgatgtgcttttctacatttgatagaacagnnnnnnnnatgttctatactacctctgtccgtatttgtaagtc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19729622 |
atatagcagccttattgaacttgaaattgatgtgcttttctacatttgatagaacagttttttttatgttctatactacctctgtccgtatttgtaagtc |
19729721 |
T |
|
| Q |
301 |
ctttcatcatcattttaacaaatatgcagtttcatcatctttctattgtatttgtt |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
19729722 |
ctttcatcatcattttaacaaatatgcagtttcatcatctttctattgtaattgtt |
19729777 |
T |
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