View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0736_low_10 (Length: 384)
Name: NF0736_low_10
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0736_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 19729446 - 19729075
Alignment:
| Q |
1 |
ttttaccaatcttcatcagtgacacacctgttgcccttttactatcaatgctgaccgatcgggtttgaacattatttgcattcatataatacagcatcgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19729446 |
ttttaccaatcttcatcagtgacacacctgttgcccttttactatcaatgctgaccgatcgggtttgaacattatttgcgttcatataatacagcatcgc |
19729347 |
T |
|
| Q |
101 |
ttgaccatattcatcatctgcaagttttcccataaaagcaaccttgccacccaaactagcaagagcaatggcaacactaccagcacaacccccgggagcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
19729346 |
ttgaccatattcatcatctgcaagttttcccataaaagcaaccttgccacccaaactagcaagagcaatggcaacactaccggcacaacctccgggagcc |
19729247 |
T |
|
| Q |
201 |
ctaacaaatttctcagggctccagagggcatccttcattctttcgtggagttcatgatctataagcctgttggcaggcctacctgaaggcacaaaagcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19729246 |
ctaacaaatttctcagggctccagagggcatccttcattctttcgtggagttcatgatctataagcctattggcaggcctacctgaaggcacaaaagcat |
19729147 |
T |
|
| Q |
301 |
gttgtgcagctccaaagcaacaaacaagaggaggccaaccgtaggtatcacttatgtcctctccatcatatt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19729146 |
gttgtgcagctccaaagcaacaaacaagaggaggccaaccgtaggtatcacttatgtcctctccatcatatt |
19729075 |
T |
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