View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0736_low_11 (Length: 380)
Name: NF0736_low_11
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0736_low_11 |
 | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
| [»] scaffold0719 (1 HSPs) |
| | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0016 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 209 - 351
Target Start/End: Original strand, 60675 - 60817
Alignment:
| Q |
209 |
acatgtacagttcaatgttttaaagattagcatataaaactatctccaagaattagaaaggtaaatcttcttcttctcaaagtttacagtgttgtctttt |
308 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60675 |
acatgtacagttcaaagttttaaagattagcatataaaactatctccaagaattagaaaggtaaatcttcttcttctcaaagtttacagtgttgtctttt |
60774 |
T |
|
| Q |
309 |
ttctctgtatatatacaagtgtagttagtagcaaagcagctag |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60775 |
ttctctgtatatatacaagtgtagttagtagcaaagcagctag |
60817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 249 - 351
Target Start/End: Original strand, 39146 - 39248
Alignment:
| Q |
249 |
tatctccaagaattagaaaggtaaatcttcttcttctcaaagtttacagtgttgtcttttttctctgtatatatacaagtgtagttagtagcaaagcagc |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39146 |
tatctccaagaattagaaaggtaaatcttcttcttctcaaagtttacagtgttgtcttttttctctgtatatatacaagtgtagttagtagcaaagcagc |
39245 |
T |
|
| Q |
349 |
tag |
351 |
Q |
| |
|
||| |
|
|
| T |
39246 |
tag |
39248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0719
Description:
Target: scaffold0719; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 249 - 344
Target Start/End: Complemental strand, 6559 - 6464
Alignment:
| Q |
249 |
tatctccaagaattagaaaggtaaatcttcttcttctcaaagtttacagtgttgtcttttttctctgtatatatacaagtgtagttagtagcaaag |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6559 |
tatctccaagaattagaaaggtaaatcttcttcttctcaaagtttatagtgttgtcttttttctttgtatatatacaagtgtagttagtagcaaag |
6464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 249 - 351
Target Start/End: Complemental strand, 20631 - 20529
Alignment:
| Q |
249 |
tatctccaagaattagaaaggtaaatcttcttcttctcaaagtttacagtgttgtcttttttctctgtatatatacaagtgtagttagtagcaaagcagc |
348 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20631 |
tatctctaagacttagaaaggtaaatctgcttcttctcaaagtttacagtgttgccttttttctctgtatatataaaagtgtagttagtagcaaagcagc |
20532 |
T |
|
| Q |
349 |
tag |
351 |
Q |
| |
|
||| |
|
|
| T |
20531 |
tag |
20529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 21135753 - 21135678
Alignment:
| Q |
244 |
aaaactatctccaagaattagaaaggtaaatcttcttcttctcaaagtttacagtgttgtcttttttctctgtatat |
320 |
Q |
| |
|
|||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21135753 |
aaaattatccccaagaattagaaaggtaa-tcttcttcttctcaaagtttacagtgttgtcttttttctctgtatat |
21135678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 14551052 - 14551084
Alignment:
| Q |
107 |
gagtttaatgcgggtggttaggttagggaaatc |
139 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
14551052 |
gagtttaatgcgggtggttaggttagagaaatc |
14551084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 29452768 - 29452736
Alignment:
| Q |
107 |
gagtttaatgcgggtggttaggttagggaaatc |
139 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
29452768 |
gagtttaatgcgggtggttaggttagagaaatc |
29452736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 29467242 - 29467210
Alignment:
| Q |
107 |
gagtttaatgcgggtggttaggttagggaaatc |
139 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
29467242 |
gagtttaatgcgggtggttaggttagagaaatc |
29467210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5425 times since January 2019
Visitors: 4850