View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0736_low_12 (Length: 373)
Name: NF0736_low_12
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0736_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 80 - 344
Target Start/End: Complemental strand, 46795898 - 46795637
Alignment:
| Q |
80 |
aggagcagagaagctaccactgtgttgaattgtgatcttttccacacaatacctagggttttcaaccattggttccaaatgttctctttccctaataatt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795898 |
aggagcagagaagctaccactgtgttgaattgtgatcttttccacacaatacctagggttttcaaccattggttccaaatgttctctttccctaataatt |
46795799 |
T |
|
| Q |
180 |
tcccttcttcatcatcttcttcttcttaccctaatagtaccctttcttttctcattgacaatcctgaaaataatgattttccaaataacaatactactct |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795798 |
tcccttcttcatcatcttcttcttcttaccctaatagtaccctttcttttctcattgacaatcctgaaaataatgattttccaaataacaatactactct |
46795699 |
T |
|
| Q |
280 |
tcttgatgattcactactttctattcctttcactacatcaacacatcatgatgttgttccattcc |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46795698 |
tcttgatgattcactactttctattcctttc---acatcaacacatcatgatgttgttccattcc |
46795637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4846 times since January 2019
Visitors: 4840