View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0736_low_13 (Length: 354)

Name: NF0736_low_13
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0736_low_13
NF0736_low_13
[»] chr2 (22 HSPs)
chr2 (28-343)||(39379539-39379854)
chr2 (28-87)||(39372207-39372266)
chr2 (126-312)||(39386437-39386626)
chr2 (164-301)||(39139771-39139908)
chr2 (126-261)||(39179534-39179673)
chr2 (28-87)||(39386334-39386393)
chr2 (166-268)||(39419997-39420100)
chr2 (123-255)||(39156683-39156817)
chr2 (123-217)||(39188437-39188534)
chr2 (203-312)||(39204564-39204674)
chr2 (37-87)||(44748569-44748619)
chr2 (28-87)||(39179717-39179776)
chr2 (49-87)||(44625145-44625183)
chr2 (172-307)||(39452040-39452177)
chr2 (161-268)||(39224535-39224643)
chr2 (37-81)||(39419841-39419885)
chr2 (28-87)||(39224722-39224781)
chr2 (123-216)||(39145025-39145119)
chr2 (164-210)||(39372054-39372100)
chr2 (52-84)||(2363551-2363583)
chr2 (28-76)||(39396231-39396279)
chr2 (164-306)||(39471627-39471770)
[»] chr5 (3 HSPs)
chr5 (161-312)||(33563134-33563292)
chr5 (37-78)||(17061239-17061280)
chr5 (28-87)||(33563384-33563443)
[»] chr7 (1 HSPs)
chr7 (199-307)||(19810024-19810134)
[»] chr6 (1 HSPs)
chr6 (28-87)||(16115264-16115323)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 28 - 343
Target Start/End: Original strand, 39379539 - 39379854
Alignment:
Q  28 cagctacaacaaattgcttcctcttgataagattctcaacaaaatctgcaaggtgcaagaccagaacaggccaaaaatatctaccaattaacaacaacaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39379539 cagctacaacaaattgcttcctcttgataagattctcaacaaaatctgcaaggtgcaagaccagaacaggccgaaaatatctaccaattaacaacaacaa 39379638  T
Q  128 aaatctaagcagattggacagaacattcaaaaattgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcata 227  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39379639 aaatctaagcagatcggacagaacattcaaaaattgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatctcata 39379738  T
Q  228 ttccaagattaacaccaagacgtcaattctctctaaacaaaggtgagaactgtgggggaaacaaaattaagccaattacatatcaagagttgtcctattt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379739 ttccaagattaacaccaagacgtcaattctctctaaacaaaggtgagaactgtgggggaaacaaaattaagccaattacatatcaagagttgtcctattt 39379838  T
Q  328 tcttaaaaggattcat 343  Q
    ||||||||||||||||    
T  39379839 tcttaaaaggattcat 39379854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 39372266 - 39372207
Alignment:
Q  28 cagctacaacaaattgcttcctcttgataagattctcaacaaaatctgcaaggtgcaaga 87  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  39372266 cagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaaga 39372207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 312
Target Start/End: Original strand, 39386437 - 39386626
Alignment:
Q  126 aaaaatctaagcagattggacagaacatt-caaaaattgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatat-gaagtttattt 223  Q
    ||||| |||||||||||| || ||| ||| ||||| ||||||||||||||||||| ||||| |||||||||||  ||||||||||| | ||||| || ||    
T  39386437 aaaaaactaagcagattgaactgaatatttcaaaatttgtcaaaccatttagaaactagaagagatacataaaaggagagataaatttcgaagtctaatt 39386536  T
Q  224 catattccaag-attaacaccaagacgtcaattctctctaaacaaaggtgagaactgtgggggaaacaaaattaagccaattacatatca 312  Q
    ||| ||| ||| ||| | | ||||| ||  ||| ||| | |||||| | |||| |||| ||||||||||||| |||||||||||| ||||    
T  39386537 cattttcaaagcattgaaagcaagatgttgattatctattaacaaacgcgagatctgttggggaaacaaaatcaagccaattacaaatca 39386626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 301
Target Start/End: Complemental strand, 39139908 - 39139771
Alignment:
Q  164 tcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctcta 262  Q
    |||||||||||| || || ||| |||||||| ||  ||||||| ||| |||||| |||||||| ||||| | ||||||||||||| ||||||| |||||     
T  39139908 tcaaaccatttataacatggaagagatacatgaa--gagagatgaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctctt 39139811  T
Q  263 aacaaaggtgagaactg-tgggggaaacaaaattaagcca 301  Q
    |||||| |  ||||||| ||||||||||||||| ||||||    
T  39139810 aacaaatgatagaactgttgggggaaacaaaatgaagcca 39139771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 261
Target Start/End: Complemental strand, 39179673 - 39179534
Alignment:
Q  126 aaaaatctaagcagattggacagaacatt-caaaaattgtcaaaccatttagaaaatagaaaagatacat--aaatagagagataaatatgaagtttatt 222  Q
    ||||| |||||||||||| || ||||||| || || || |||||||||||||||||||||| ||||||||  ||| |||||||||||| | |||| || |    
T  39179673 aaaaaactaagcagattgaactgaacatttcacaatttatcaaaccatttagaaaatagaagagatacataaaaagagagagataaatttcaagtctaat 39179574  T
Q  223 tcatattccaag-attaacaccaagacgtcaattctctct 261  Q
    |||| ||| ||| ||||| ||||||| ||||||| |||||    
T  39179573 tcattttcaaagcattaaaaccaagatgtcaattttctct 39179534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 39386334 - 39386393
Alignment:
Q  28 cagctacaacaaattgcttcctcttgataagattctcaacaaaatctgcaaggtgcaaga 87  Q
    ||||| ||||||||||||||||||||||||||| || ||||||||||| ||| |||||||    
T  39386334 cagcttcaacaaattgcttcctcttgataagatgcttaacaaaatctggaagatgcaaga 39386393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 39419997 - 39420100
Alignment:
Q  166 aaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctctaaa 264  Q
    |||||||||||||||| ||| |||| | |||| |||||||||||| | |||| |||||||| || |||| |||||||| |||| ||||||| ||||| ||    
T  39419997 aaaccatttagaaaatggaagagatgcgtaaaaagagagataaatttcaagtatatttcattttacaagcattaacacaaagatgtcaattttctcttaa 39420096  T
Q  265 caaa 268  Q
    ||||    
T  39420097 caaa 39420100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 255
Target Start/End: Complemental strand, 39156817 - 39156683
Alignment:
Q  123 aacaaaaatctaagcagattggacagaacattcaaaaattgtcaaaccatttagaaaatagaaaagatacat-aaatagagagataaatatgaagtttat 221  Q
    ||||||||||||||| |||||||| ||| |||||||  | |||| |||||||||||||| ||| ||| |||| ||| |||||||| | | | || | |||    
T  39156817 aacaaaaatctaagctgattggactgaatattcaaacttcgtcataccatttagaaaatggaagagacacataaaaaagagagatcagtttcaattctat 39156718  T
Q  222 ttcatattccaag-attaacaccaagacgtcaatt 255  Q
    ||||| ||||||| ||||||||||||  |||||||    
T  39156717 ttcattttccaagcattaacaccaagttgtcaatt 39156683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 39188437 - 39188534
Alignment:
Q  123 aacaaaaatctaagcagattggacagaaca-ttcaaaaattgtcaaaccatttagaaaatagaaaagatac--ataaatagagagataaatatgaagt 217  Q
    ||||||||||| |||||||||||| ||| | ||||||| ||||||||||||||  ||||||||| | ||||  ||||| |||||||||||| ||||||    
T  39188437 aacaaaaatcttagcagattggactgaatagttcaaaagttgtcaaaccatttgaaaaatagaagaaatacatataaaaagagagataaatttgaagt 39188534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 39204564 - 39204674
Alignment:
Q  203 agataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctctaaacaaaggtgagaactgtgggggaaacaaaattaagcca 301  Q
    |||||||| | |||| ||||||||  || ||| ||||| || |||| ||||||| ||||  |||||| |||||| |||| ||||||||||||| ||||||    
T  39204564 agataaatttcaagtctatttcattctcaaagcattaaaacgaagatgtcaattttctcgtaacaaatgtgagatctgttggggaaacaaaatgaagcca 39204663  T
Q  302 attacatatca 312  Q
    |||||||||||    
T  39204664 attacatatca 39204674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 44748619 - 44748569
Alignment:
Q  37 caaattgcttcctcttgataagattctcaacaaaatctgcaaggtgcaaga 87  Q
    |||||| |||| |||||||||||||||||||||||||||||||||| ||||    
T  44748619 caaatttcttcatcttgataagattctcaacaaaatctgcaaggtgtaaga 44748569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 39179776 - 39179717
Alignment:
Q  28 cagctacaacaaattgcttcctcttgataagattctcaacaaaatctgcaaggtgcaaga 87  Q
    ||||| |||||| ||||||||| |||||||||| || ||||||||||||||| |||||||    
T  39179776 cagctgcaacaatttgcttcctgttgataagatgcttaacaaaatctgcaagatgcaaga 39179717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 44625183 - 44625145
Alignment:
Q  49 tcttgataagattctcaacaaaatctgcaaggtgcaaga 87  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  44625183 tcttgataagattctcaacaaaatctgcaaggtgtaaga 44625145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 307
Target Start/End: Complemental strand, 39452177 - 39452040
Alignment:
Q  172 tttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctctaaacaaagg 270  Q
    |||||||||| ||| |||| |||||| ||||||||| || | ||||  ||||||| ||||||| |||||||| |||| ||||||| || || |||||| |    
T  39452177 tttagaaaatggaagagatgcataaaaagagagatacatttcaagtcaatttcattttccaagcattaacactaagatgtcaattttcccttaacaaatg 39452078  T
Q  271 tgagaactgt-gggggaaacaaaattaagccaattaca 307  Q
     || ||| || |||||||||||||| || | |||||||    
T  39452077 agacaacagttgggggaaacaaaatgaatcgaattaca 39452040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 39224643 - 39224535
Alignment:
Q  161 ttgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctct 259  Q
    ||||||||||||||||||||||| | |||||||  || |||||||||||| | || | | |||||| ||| ||| ||||| ||||||  ||||||| |||    
T  39224643 ttgtcaaaccatttagaaaatagtatagatacaagaaaagagagataaatttcaattctgtttcattttcaaagcattaaaaccaagctgtcaattttct 39224544  T
Q  260 ctaaacaaa 268  Q
    || ||||||    
T  39224543 cttaacaaa 39224535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 39419841 - 39419885
Alignment:
Q  37 caaattgcttcctcttgataagattctcaacaaaatctgcaaggt 81  Q
    |||||||||||||| | ||||||||||||||||||||||| ||||    
T  39419841 caaattgcttcctccttataagattctcaacaaaatctgcgaggt 39419885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 39224781 - 39224722
Alignment:
Q  28 cagctacaacaaattgcttcctcttgataagattctcaacaaaatctgcaaggtgcaaga 87  Q
    ||||| |||||| |||||||||| ||||||||  || ||||||||||||||| |||||||    
T  39224781 cagcttcaacaatttgcttcctcatgataagacgcttaacaaaatctgcaagatgcaaga 39224722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 39145119 - 39145025
Alignment:
Q  123 aacaaaaatctaagcagattggacagaaca-ttcaaaaattgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaag 216  Q
    |||||||| || |||||||||||| ||| | ||||||| ||||||||||||||  ||||||||| | ||||||| | | ||||||| || |||||    
T  39145119 aacaaaaagcttagcagattggactgaatagttcaaaagttgtcaaaccatttgaaaaatagaagaaatacatataaaaagagatatatttgaag 39145025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 39372100 - 39372054
Alignment:
Q  164 tcaaaccatttagaaaatagaaaagatacataaatagagagataaat 210  Q
    |||||||||||| ||||||||| |||||||||||  |||||||||||    
T  39372100 tcaaaccatttataaaatagaagagatacataaaaggagagataaat 39372054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 2363583 - 2363551
Alignment:
Q  52 tgataagattctcaacaaaatctgcaaggtgca 84  Q
    |||||||||||| ||||||||||||||||||||    
T  2363583 tgataagattctgaacaaaatctgcaaggtgca 2363551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 39396231 - 39396279
Alignment:
Q  28 cagctacaacaaattgcttcctcttgataagattctcaacaaaatctgc 76  Q
    ||||||||||||| ||||| ||| |||||||||| | ||||||||||||    
T  39396231 cagctacaacaaactgctttctcctgataagatttttaacaaaatctgc 39396279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 306
Target Start/End: Original strand, 39471627 - 39471770
Alignment:
Q  164 tcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctcta 262  Q
    ||||||||||| ||||||  |  ||||||||||| |||||| ||||  | | || |||||||| ||||||  ||||||||||||| ||||||| |||||     
T  39471627 tcaaaccatttcgaaaatgcatgagatacataaa-agagaggtaaaattcatgtctatttcattttccaatcattaacaccaagatgtcaattttctctt 39471725  T
Q  263 aacaaaggtgagaactg-tgggggaaacaaaattaagccaattac 306  Q
    |||||| |  ||||||| | | ||| ||||||| |||||||||||    
T  39471726 aacaaatgatagaactgttagcggacacaaaataaagccaattac 39471770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 161 - 312
Target Start/End: Complemental strand, 33563292 - 33563134
Alignment:
Q  161 ttgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattc-------caagattaacaccaagacgtcaa 253  Q
    ||||||||||||||||||||||||| |||||||||||  ||||||||||| | |||| |||||||| |||        ||| |||| | ||||| |||||    
T  33563292 ttgtcaaaccatttagaaaatagaagagatacataaaatgagagataaatttcaagtctatttcattttcaaagcattaagtttaaaatcaagatgtcaa 33563193  T
Q  254 ttctctctaaacaaaggtgagaactgtgggggaaacaaaattaagccaattacatatca 312  Q
    || ||||| |||||| |||||| |||| || |||||||||| |||||||||||||||||    
T  33563192 ttttctcttaacaaatgtgagatctgttggtgaaacaaaatgaagccaattacatatca 33563134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 17061280 - 17061239
Alignment:
Q  37 caaattgcttcctcttgataagattctcaacaaaatctgcaa 78  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  17061280 caaattccttcctcttgataagattctcaacaaaatctgcaa 17061239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 33563443 - 33563384
Alignment:
Q  28 cagctacaacaaattgcttcctcttgataagattctcaacaaaatctgcaaggtgcaaga 87  Q
    ||||| |||||| ||||||||| |||||||||| || ||||||||||||||| |||||||    
T  33563443 cagctgcaacaatttgcttcctgttgataagatgcttaacaaaatctgcaagatgcaaga 33563384  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 19810134 - 19810024
Alignment:
Q  199 agagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctctaaacaaaggtgagaactg-tgggggaaacaaaatta 296  Q
    |||||||||||| |||||| ||||| || ||||||| |||||||| | || ||||||| ||||| |||||| |  ||||||| | ||||||||||||| |    
T  19810134 agagagataaatttgaagtctatttgattttccaagcattaacactatgatgtcaattttctcttaacaaatgatagaactgttaggggaaacaaaatga 19810035  T
Q  297 agccaattaca 307  Q
    |||||| ||||    
T  19810034 agccaactaca 19810024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 16115323 - 16115264
Alignment:
Q  28 cagctacaacaaattgcttcctcttgataagattctcaacaaaatctgcaaggtgcaaga 87  Q
    ||||| ||||||||||||| ||| |||||||||  | ||||||||||||||||| |||||    
T  16115323 cagcttcaacaaattgctttctcctgataagatatttaacaaaatctgcaaggtacaaga 16115264  T

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