View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0736_low_16 (Length: 310)
Name: NF0736_low_16
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0736_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5080475 - 5080714
Alignment:
| Q |
1 |
caactgcatatgatgcaattgttattctgcctcatttgttgtaaatggtaagctttatcagattctaannnnnnnngacctttcggtttgtattttgttc |
100 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |
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| T |
5080475 |
caactgcatatgaggcaattgttattctgcctcatttgttgtaaatggtaagctttatcagattctaattttttttgactttttggtttgtattttgttc |
5080574 |
T |
|
| Q |
101 |
attgtaggatgttttgttgtgtggtgtatatgcacgaagagaggctgattatggcaacattgatcttgcaagaaaggtgtttgacatggcattgctatct |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
5080575 |
attgtaggatgttttgttgtgtggtgtatatgcacgaagagaggctgattatggcaacattgatcttgcaagaaaggtgtttgacatggcattgttatcc |
5080674 |
T |
|
| Q |
201 |
gtggaagggcttcctcccgaggtatgtactgtattctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
5080675 |
gtggaagggcttcctcccgaggtatgtactgtattctctg |
5080714 |
T |
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