View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0736_low_19 (Length: 286)
Name: NF0736_low_19
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0736_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 159868 - 159629
Alignment:
| Q |
1 |
aggaacctaagtcgatgacaccttttcccactaaacgcaattaattttacgagcatcttcactcttctacttaggggtgtacacttgttgagtcgaccga |
100 |
Q |
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| T |
159868 |
aggaacctaagtcgatgacaccttttcccacttaacgcaatgaattttaggagcatcttcactcttctacttaggggtgtacacatgttgagtcgaccga |
159769 |
T |
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| Q |
101 |
actcatttatcttgggaatgttttgaaaggtaggaaaagatgtgattatcttctcaaatatgtgtaggtgaatgttttgggatgatatcttaagtcggct |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
159768 |
actcatttatcttgggaatgttttggaaggtaggaaaagatgtgattatcttctcaaatatgtgtaggtgaatgttttgggatgatatcttaagtcggct |
159669 |
T |
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| Q |
201 |
gggcattactcccgtattttctaatcatagtttgcttcat |
240 |
Q |
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| T |
159668 |
gggcattactcccgtattttctaatcatagtttgcttcat |
159629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 151322 - 151222
Alignment:
| Q |
133 |
ggaaaagatgtgattatcttctcaaatatgtgtaggtgaatgttttgggatgatatcttaagtcggctgggcattactcccgtattttctaatcatagtt |
232 |
Q |
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| T |
151322 |
ggaaaggatgtgattatcttctcaattatttgtaagtgaatgttatggggtgatatcttaggtcggctgggcattactcccatattttctaatcatagtt |
151223 |
T |
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| Q |
233 |
t |
233 |
Q |
| |
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| |
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| T |
151222 |
t |
151222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 159911 - 159864
Alignment:
| Q |
71 |
ttaggggtgtacacttgttgagtcgaccgaactcatttatcttgggaa |
118 |
Q |
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| T |
159911 |
ttaggggtgtacactagttgagtcgaccgaactcatttatcttaggaa |
159864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 151474 - 151427
Alignment:
| Q |
71 |
ttaggggtgtacacttgttgagtcgaccgaactcatttatcttgggaa |
118 |
Q |
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||||||||||||||| || |||||| ||||||||||||||||| |||| |
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| T |
151474 |
ttaggggtgtacactagtcgagtcgtccgaactcatttatcttaggaa |
151427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 151431 - 151370
Alignment:
| Q |
1 |
aggaacctaagtcgatgacaccttttcccactaaacgcaattaattttacgagcatcttcact |
63 |
Q |
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||||||| ||||||||||| |||||| | ||| |||||||| ||||||||||| ||||||||| |
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| T |
151431 |
aggaacccaagtcgatgactcctttttc-acttaacgcaatgaattttacgagtatcttcact |
151370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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