View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0736_low_2 (Length: 503)

Name: NF0736_low_2
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0736_low_2
NF0736_low_2
[»] chr3 (3 HSPs)
chr3 (90-495)||(48385410-48385815)
chr3 (90-358)||(48396266-48396534)
chr3 (91-495)||(48365867-48366284)
[»] chr5 (1 HSPs)
chr5 (90-154)||(33618671-33618735)


Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 90 - 495
Target Start/End: Complemental strand, 48385815 - 48385410
Alignment:
Q  90 atcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaaggttgtatcttatattgagatcttcaaatattttctt 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48385815 atcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaaggttgtatcttatattgagatcttcaaatattttctt 48385716  T
Q  190 tacttccattactagttcacttctccgcttggtcttctctccaaactcttgaaaattcattgtgtgagtaacaaaaagacccatcttaatattatttaca 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48385715 tacttccattactagttcacttctccgcttggtcttctctccaaactcttgaaaattcattgtgtgagtaacaaaaagacccatcttaatattatttaca 48385616  T
Q  290 ttttcaatctccttcactaccaatccgaaattaggatgccagtattgtggattcttctccaaatacctagttttgaaaaagacattagaacaaagaaatg 389  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  48385615 ttttcaatctccttcactaccaatccaaaattaggatgccagtattgtggattcttctccaaatacctagttttgaaaaagacattagaacaaagaaatt 48385516  T
Q  390 cattgaaatactaagattacggcaataagacttgttccaaattgaggataaaactccactagcttacctcttcactttttctttcagtgccccaattttc 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48385515 cattgaaatactaagattacggcaataagacttgttccaaattgaggataaaactccactagcttacctcttcactttttctttcagtgccccaattttc 48385416  T
Q  490 tctgct 495  Q
    ||||||    
T  48385415 tctgct 48385410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 90 - 358
Target Start/End: Original strand, 48396266 - 48396534
Alignment:
Q  90 atcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaaggttgtatcttatattgagatcttcaaatattttctt 189  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||| |||||||| |||||||||||||||||    
T  48396266 atcatcacttgagataacttgaatcaggttccatgtgtctgagatgaacaccttgcggaataaggtagtatctgatattgagctcttcaaatattttctt 48396365  T
Q  190 tacttccattactagttcacttctccgcttggtcttctctccaaactcttgaaaattcattgtgtgagtaacaaaaagacccatcttaatattatttaca 289  Q
    ||||||||| |||| ||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||||||    
T  48396366 tacttccatcactaattcacttctccgcttagtcttctccccaaattcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttatttaca 48396465  T
Q  290 ttttcaatctccttcactaccaatccgaaattaggatgccagtattgtggattcttctccaaataccta 358  Q
    |||||||||||||||||| |||| | |||| ||||||||||||||||||||||| ||||||||||||||    
T  48396466 ttttcaatctccttcactgccaaactgaaactaggatgccagtattgtggattcctctccaaataccta 48396534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 91 - 495
Target Start/End: Complemental strand, 48366284 - 48365867
Alignment:
Q  91 tcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaaggttgtatcttatattgagatcttcaaatattttcttt 190  Q
    ||||||||||||| ||||||  |||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| | ||     
T  48366284 tcatcatttgagagaacttgtgtcaggttctatgtgtctgagatgaacaccttgtggaagaaggctgtatctgatattgagctcttcaaatattctttta 48366185  T
Q  191 acttccattactagttcacttctccgcttggtcttctctccaaactcttgaaaattcattgtgtgagtaacaaaaagacccatcttaatattatttacat 290  Q
    |||||||| |||||||||||| |||  ||   ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||    
T  48366184 acttccatcactagttcacttttcctattcaccttctctccaaactcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttatttacat 48366085  T
Q  291 tttcaatctccttcactaccaatccgaaattaggatgccagtattgtggattcttctccaaatacc-----------tagttttgaaaaagacattagaa 379  Q
    ||||||||||  | |||||||| | |||||||||||||||||||||||||||| |||||   ||||           || |||| || || |||||| ||    
T  48366084 tttcaatctctattactaccaagctgaaattaggatgccagtattgtggattcctctccgcgtacctattttttatttatttttaaacaaaacattacaa 48365985  T
Q  380 caaagaaatgcattgaaatactaagattacggcaataagacttgttccaaattgaggataaaac--tccactagcttacctcttcactttttctttcagt 477  Q
    ||||||||| ||| |||||  ||||||||  |||| |||| ||||||||||||   ||||||||  | || ||||||||||| | | ||||||||||| |    
T  48365984 caaagaaatacatagaaatcttaagattaaagcaacaagagttgttccaaatttgtgataaaacttttcagtagcttacctcgttattttttctttcaat 48365885  T
Q  478 gccccaattttctctgct 495  Q
    || |||||||||||||||    
T  48365884 gctccaattttctctgct 48365867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 33618671 - 33618735
Alignment:
Q  90 atcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaagg 154  Q
    |||||||||||||  |||||| || ||||||||||||||| ||||||||||||||||||| ||||    
T  33618671 atcatcatttgagtaaacttgtattaggttccatgtgtctaagatgaacaccttgtggaataagg 33618735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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