View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0736_low_20 (Length: 286)
Name: NF0736_low_20
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0736_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 65 - 228
Target Start/End: Original strand, 22743979 - 22744142
Alignment:
| Q |
65 |
gttagaagtaacctcgacccgctcgaagagtacacagatgaacagatttgggaggtaattcttcttgacaatgagaaataactgatccctttactgcaag |
164 |
Q |
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| T |
22743979 |
gttagaagtaacctcgacccgctcgaagagtacacagatgaacagatttgggaggtaattcttcttgacaatgagaaataactgatccctttactgcaag |
22744078 |
T |
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| Q |
165 |
ttatacaaattaatatattttatcaaatatttcaggctctagatatgtgtcaacttggtgatga |
228 |
Q |
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| T |
22744079 |
ttatacaaattaatatattttatcaaatatttcaggctctagatatgtgtcaacttggtgatga |
22744142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 228
Target Start/End: Complemental strand, 22667023 - 22666859
Alignment:
| Q |
68 |
agaagtaacctcgacccgctcgaagagtacacagatgaacagatttgggaggtaa-----ttcttcttgacaatgagaaataactgatccctttactgca |
162 |
Q |
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| T |
22667023 |
agaagtaacctggacccgctcgaagagtatacagatgaacagatttgggaggtaatttagttttgcttgaaaagaaaaaataaccgatccttttagttca |
22666924 |
T |
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| Q |
163 |
agttatacaaattaatatattttatcaaatatttcaggctctagatatgtgtcaacttggtgatga |
228 |
Q |
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| T |
22666923 |
agttatacaatttca-atattttgtgaaatgttttaggctctagatatgtgccaacttggagatga |
22666859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 228
Target Start/End: Complemental strand, 22723662 - 22723498
Alignment:
| Q |
68 |
agaagtaacctcgacccgctcgaagagtacacagatgaacagatttgggaggtaa-----ttcttcttgacaatgagaaataactgatccctttactgca |
162 |
Q |
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| T |
22723662 |
agaagtaacctggacccgctcgaagagtatacagatgaacagatttgggaggtaatttagttttgcttgaaaagaaaaaataaccgatccttttagttca |
22723563 |
T |
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| Q |
163 |
agttatacaaattaatatattttatcaaatatttcaggctctagatatgtgtcaacttggtgatga |
228 |
Q |
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| T |
22723562 |
agttatacaatttca-atattttgtgaaatgttttaggctctagatatgtgccaacttggagatga |
22723498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 41435509 - 41435457
Alignment:
| Q |
68 |
agaagtaacctcgacccgctcgaagagtacacagatgaacagatttgggaggt |
120 |
Q |
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| T |
41435509 |
agaagtaatctggacccgctggaagagtacactgatgaacaaatatgggaggt |
41435457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 41442599 - 41442547
Alignment:
| Q |
68 |
agaagtaacctcgacccgctcgaagagtacacagatgaacagatttgggaggt |
120 |
Q |
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| T |
41442599 |
agaagtaatctggacccgctggaagagtacactgatgaacaaatatgggaggt |
41442547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 41448720 - 41448668
Alignment:
| Q |
68 |
agaagtaacctcgacccgctcgaagagtacacagatgaacagatttgggaggt |
120 |
Q |
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|||||||| || |||||||| ||||||||||| |||||||| || |||||||| |
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| T |
41448720 |
agaagtaatctggacccgctggaagagtacactgatgaacaaatatgggaggt |
41448668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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