View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0736_low_26 (Length: 261)
Name: NF0736_low_26
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0736_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 39 - 236
Target Start/End: Complemental strand, 36748597 - 36748400
Alignment:
| Q |
39 |
gtaggtgctagagttgctggtgctgctcttgcctatacacttggaaaggtatactattactatatatagccttttatttcttgagtttatgcatttcatc |
138 |
Q |
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| T |
36748597 |
gtaggtgctggagttgctggtgctgctcttgcctatacacttggaaaggtatactattactatatatagccttttatttcttgagtttatgcatttcatc |
36748498 |
T |
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| Q |
139 |
aatatcatggtttttcttgtgttgttatatgaaatcaaatacactttttgattcatagctttgcttatatcatgattcacagaaaagattggtttcat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
36748497 |
aatatcatggtttttcttgtgttgttatatgaaatcaaatacactttttgattcatagatttgcttatatcatgatccacagaaaagattggtttcat |
36748400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 12400137 - 12400187
Alignment:
| Q |
39 |
gtaggtgctagagttgctggtgctgctcttgcctatacacttggaaaggta |
89 |
Q |
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| T |
12400137 |
gtaggtgctggagttgctggttctgctcttgcttacacacttggaaaggta |
12400187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 12253187 - 12253137
Alignment:
| Q |
39 |
gtaggtgctagagttgctggtgctgctcttgcctatacacttggaaaggta |
89 |
Q |
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||||||||| | ||||||||| |||||||||| || ||||||||||||||| |
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| T |
12253187 |
gtaggtgctggtgttgctggttctgctcttgcttacacacttggaaaggta |
12253137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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