View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0736_low_27 (Length: 250)

Name: NF0736_low_27
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0736_low_27
NF0736_low_27
[»] chr1 (2 HSPs)
chr1 (14-250)||(48911951-48912189)
chr1 (15-73)||(4108632-4108690)
[»] chr5 (4 HSPs)
chr5 (18-66)||(29372226-29372274)
chr5 (18-66)||(7509677-7509725)
chr5 (15-73)||(18924402-18924460)
chr5 (89-145)||(18924479-18924535)
[»] chr3 (5 HSPs)
chr3 (15-73)||(27948425-27948483)
chr3 (18-66)||(21980651-21980699)
chr3 (18-66)||(22003082-22003130)
chr3 (89-146)||(21980566-21980623)
chr3 (89-146)||(22002997-22003054)
[»] chr8 (2 HSPs)
chr8 (88-147)||(14109669-14109728)
chr8 (88-145)||(35971967-35972024)
[»] chr2 (2 HSPs)
chr2 (88-151)||(8962212-8962275)
chr2 (15-73)||(2280112-2280170)
[»] chr7 (4 HSPs)
chr7 (88-145)||(35240593-35240650)
chr7 (87-146)||(1503284-1503343)
chr7 (15-66)||(26048890-26048941)
chr7 (88-142)||(32838202-32838256)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 48911951 - 48912189
Alignment:
Q  14 atatagtaagatcaatgttcttcattaatctaatggtgacaaatgtcatttttattatacnnnnnnnn--tcaccattttttaatgtctcctatagtagg 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||          ||||||||||||||||||||||| ||||||    
T  48911951 atatagtaagatcaatgttcttcatcaatctaatggtgacaaatgtcatttttgttatacaaaaaaaaaatcaccattttttaatgtctcctacagtagg 48912050  T
Q  112 agacctattctcgtctcctaccggaaacggcgcctatgatacaacatttccatgtttgaaacttcttataaaatttctaaacnnnnnnnaagcatgtatc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  48912051 agacctattctcgtctcctaccggaaacggcgcctatgatacaacatttccatgtttgaaacttcttataaaatttctaaactttttttaagcatgtatc 48912150  T
Q  212 tattctacttctgaataaaatgctatatacctgcttagc 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  48912151 tattctacttctgaataaaatgctatatacctgcttagc 48912189  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 4108632 - 4108690
Alignment:
Q  15 tatagtaagatcaatgttcttcattaatctaatggtgacaaatgtcatttttattatac 73  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||||||||| ||||||    
T  4108632 tatagtaagatcaatgttcttcatcaatctaacggtgacaagtgtcatttttgttatac 4108690  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 29372226 - 29372274
Alignment:
Q  18 agtaagatcaatgttcttcattaatctaatggtgacaaatgtcattttt 66  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29372226 agtaagatcaatgttcttcatcaatctaatggtgacaaatgtcattttt 29372274  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 7509677 - 7509725
Alignment:
Q  18 agtaagatcaatgttcttcattaatctaatggtgacaaatgtcattttt 66  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  7509677 agtaagatcagtgttcttcatcaatctaatggtgacaaatgtcattttt 7509725  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 18924402 - 18924460
Alignment:
Q  15 tatagtaagatcaatgttcttcattaatctaatggtgacaaatgtcatttttattatac 73  Q
    |||||||||||||||||||||||| |||  |||||||||| | ||||||||| ||||||    
T  18924402 tatagtaagatcaatgttcttcatcaattcaatggtgacacaagtcatttttgttatac 18924460  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 18924479 - 18924535
Alignment:
Q  89 tttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcc 145  Q
    ||||||| ||||||||  || ||||||||||||  |||||||| |||||||||||||    
T  18924479 tttttaaagtctcctaccgtgggagacctattcaagtctcctatcggaaacggcgcc 18924535  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 27948483 - 27948425
Alignment:
Q  15 tatagtaagatcaatgttcttcattaatctaatggtgacaaatgtcatttttattatac 73  Q
    |||||||||||||||||||||| | ||| ||| |||||||| |||||||||||||||||    
T  27948483 tatagtaagatcaatgttcttcgtcaatataacggtgacaagtgtcatttttattatac 27948425  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 21980699 - 21980651
Alignment:
Q  18 agtaagatcaatgttcttcattaatctaatggtgacaaatgtcattttt 66  Q
    ||||| |||| |||||||||| |||||||||||||||||||||||||||    
T  21980699 agtaaaatcagtgttcttcatcaatctaatggtgacaaatgtcattttt 21980651  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 22003130 - 22003082
Alignment:
Q  18 agtaagatcaatgttcttcattaatctaatggtgacaaatgtcattttt 66  Q
    ||||| |||| |||||||||| |||||||||||||||||||||||||||    
T  22003130 agtaaaatcagtgttcttcatcaatctaatggtgacaaatgtcattttt 22003082  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 21980623 - 21980566
Alignment:
Q  89 tttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcct 146  Q
    ||||||||||||||||| ||||||||||||||    |||||||||| ||| |||||||    
T  21980623 tttttaatgtctcctatcgtaggagacctatttaaatctcctaccgaaaatggcgcct 21980566  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 22003054 - 22002997
Alignment:
Q  89 tttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcct 146  Q
    ||||||||||||||||| ||||||||||||||    |||||||||| ||| |||||||    
T  22003054 tttttaatgtctcctatcgtaggagacctatttaaatctcctaccgaaaatggcgcct 22002997  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 14109669 - 14109728
Alignment:
Q  88 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgccta 147  Q
    |||||||||||||||||  |||||||||||||||  |||||||||| |||| ||||||||    
T  14109669 ttttttaatgtctcctactgtaggagacctattcaagtctcctaccagaaatggcgccta 14109728  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 35971967 - 35972024
Alignment:
Q  88 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcc 145  Q
    |||||||||||||||||  |||||||||||||||  ||||||||||  ||||||||||    
T  35971967 ttttttaatgtctcctaccgtaggagacctattcaagtctcctaccataaacggcgcc 35972024  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 8962212 - 8962275
Alignment:
Q  88 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcctatgat 151  Q
    |||| |||||||||||| |||||||||||||||   ||||||||||||||||| ||||| ||||    
T  8962212 ttttataatgtctcctacagtaggagacctatttaagtctcctaccggaaacgacgcctgtgat 8962275  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 2280112 - 2280170
Alignment:
Q  15 tatagtaagatcaatgttcttcattaatctaatggtgacaaatgtcatttttattatac 73  Q
    |||||||||||||||||||||| | ||| ||| |||||||| | |||||||| ||||||    
T  2280112 tatagtaagatcaatgttcttcgtcaatataacggtgacaagtttcatttttgttatac 2280170  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 35240650 - 35240593
Alignment:
Q  88 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcc 145  Q
    ||||||||||||| |||  ||||||||| |||||  ||||||||||||||||||||||    
T  35240650 ttttttaatgtcttctaccgtaggagacatattcaagtctcctaccggaaacggcgcc 35240593  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 1503284 - 1503343
Alignment:
Q  87 attttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcct 146  Q
    ||||||||||||||||||  || ||||||||||||  ||||||||||  |||||||||||    
T  1503284 attttttaatgtctcctactgtgggagacctattcaagtctcctaccataaacggcgcct 1503343  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 26048941 - 26048890
Alignment:
Q  15 tatagtaagatcaatgttcttcattaatctaatggtgacaaatgtcattttt 66  Q
    |||||||||| ||||||||||||| |||||||| || ||| |||||||||||    
T  26048941 tatagtaagaccaatgttcttcatcaatctaatagtaacatatgtcattttt 26048890  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 32838256 - 32838202
Alignment:
Q  88 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggc 142  Q
    |||| ||||||||||||  |||||||||||||||  |||||||| ||||||||||    
T  32838256 ttttataatgtctcctaccgtaggagacctattcaagtctcctaacggaaacggc 32838202  T

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