View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0736_low_6 (Length: 399)
Name: NF0736_low_6
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0736_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 104 - 399
Target Start/End: Complemental strand, 39300771 - 39300476
Alignment:
| Q |
104 |
tttctaccaagcacaaactcatacgaggcactccttcaatcttccacgtgtctttaaacacgaaaaaccagcctcgtctcatccaatcatcctaatccat |
203 |
Q |
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| T |
39300771 |
tttctaccaagcacaaactcatacgaggcaatccttcaatcttccacgtgtctttaaacacgaaaaaccagcctcgtttcatccaatcatcctaatccat |
39300672 |
T |
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| Q |
204 |
ctatattttaattttcattattataagctgagtcacaatatccaatttcacaacattcacacgtgtcattaatcactgtttcttattccacatgtcatac |
303 |
Q |
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| T |
39300671 |
ctatattttaattttcattattataagctgagtcacaatatccaatttcacaccattcacacgtgttattaatcactgtttcttattccacatgtcatac |
39300572 |
T |
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| Q |
304 |
tccatgcaaaacatatccaccacaaacctcttcaaaccgccaatacctttctccttttaaatcacacaacatttccatgcacacatacaaaaaaca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300571 |
tccatgcaaaacatatccaccacaaacctcttcaaaccgccaatacctttctccttttaaatcacacaacatttccatgcacacatacaaaaaaca |
39300476 |
T |
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