View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0736_low_7 (Length: 393)
Name: NF0736_low_7
Description: NF0736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0736_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 96 - 383
Target Start/End: Original strand, 9360713 - 9361000
Alignment:
| Q |
96 |
agcttttgcatgctcatacacttcatggtaacaaatggtcacacattagcaaattctttcctggaaggacagataatgcactgaagaatcattatcatgt |
195 |
Q |
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| T |
9360713 |
agcttttgcatgctcatacacttcatggtaacaaatggtcacacatttgcaaattctttcctggaaggacagacaatgcactgaagaatcattttcatgt |
9360812 |
T |
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| Q |
196 |
gatcatggctaggaagcaaagggaactattatcatctatttcaagaaagagaaagctaacatttcaaatcccagcaaataataatgtagctagcaaatca |
295 |
Q |
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| T |
9360813 |
gattatggctaggaagcaaagggaactattatcatctatttcaagaaagagaaagctaacatttcaaatcccagcaaataataatgtagctagcaaatca |
9360912 |
T |
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| Q |
296 |
gcaatcacaagtccctttgatgaatctaactcaacttgcaccaatctcaacctcactactaggcctttgcttaattaccatgcctatg |
383 |
Q |
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| T |
9360913 |
gcaatcacaagtccctttgatgaatctaactcaacttgcaccaatctcaacctcactactaggcctttgcttaattaccatgcctatg |
9361000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 109 - 273
Target Start/End: Original strand, 9348153 - 9348317
Alignment:
| Q |
109 |
tcatacacttcatggtaacaaatggtcacacattagcaaattctttcctggaaggacagataatgcactgaagaatcattatcatgtgatcatggctagg |
208 |
Q |
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| T |
9348153 |
tcatacacttcatggtaccaaatgggcacacatttccaaacattttccaggaaggagagacaatgcactaaagaatcattaccatgtgatcaaggctagg |
9348252 |
T |
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| Q |
209 |
aagcaaagggaactattatcatctatttcaagaaagagaaagctaacatttcaaatcccagcaaa |
273 |
Q |
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| T |
9348253 |
aggcaaagggaactcctatcatctattgcaagaaaggaaaagctaacatatgaaatcccagcaaa |
9348317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 109 - 273
Target Start/End: Original strand, 9356178 - 9356342
Alignment:
| Q |
109 |
tcatacacttcatggtaacaaatggtcacacattagcaaattctttcctggaaggacagataatgcactgaagaatcattatcatgtgatcatggctagg |
208 |
Q |
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| T |
9356178 |
tcatacacttcatggtaccaaatgggcacacatttccaaacattttccaggaaggagagacaatgcactaaagaatcattaccatgtgatcaaggctagg |
9356277 |
T |
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| Q |
209 |
aagcaaagggaactattatcatctatttcaagaaagagaaagctaacatttcaaatcccagcaaa |
273 |
Q |
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| T |
9356278 |
aggcaaagggaactcctatcatctattgcaagaaaggaaaagctaacatatgaaatcccagcaaa |
9356342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 33825709 - 33825654
Alignment:
| Q |
152 |
tttcctggaaggacagataatgcactgaagaatcattatcatgtgatcatggctag |
207 |
Q |
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||||| || ||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
33825709 |
tttccagggaggacagataatgcagtgaagaatcattggcatgtgatcatggctag |
33825654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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