View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737D-Insertion-1 (Length: 281)
Name: NF0737D-Insertion-1
Description: NF0737D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737D-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 36067667 - 36067937
Alignment:
| Q |
8 |
gtaaacatctccaaaaccaccttctccgatcttgttatcttcagagaacttgtttgttgctagtcgaatcatatcgaaatcaaattgcagagagttcact |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36067667 |
gtaaacatctccaaaaccaccttctccgatcttgttatcttcagagaacttgtttgttgctagtcgaatcatatcgaaatcaaattgcagagagttcact |
36067766 |
T |
|
| Q |
108 |
tctgatgtaatctcttccccaactataccatagaagtataaaatnnnnnnntttgattcagtaactgaaagtttacaacattaaaatatatcacaaatgg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36067767 |
tctgatgtaatctcttccccaactataccatagaagtataaaataaaaaaatttgattcagtaactgaaagtttacaacattaaaatatatcacaaatgg |
36067866 |
T |
|
| Q |
208 |
aaattctttttagttccacattacaattttctctgtggtacatgagattcttcctcgctctcctacgtctc |
278 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36067867 |
aaattctttttagttccacattacaattttctctgtggtacatgagattcttcctcgctctcctacgtctc |
36067937 |
T |
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