View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0737D-Insertion-11 (Length: 804)

Name: NF0737D-Insertion-11
Description: NF0737D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0737D-Insertion-11
NF0737D-Insertion-11
[»] chr3 (13 HSPs)
chr3 (7-622)||(5852590-5853212)
chr3 (7-271)||(5847642-5847905)
chr3 (19-164)||(5485851-5485996)
chr3 (7-237)||(5801277-5801508)
chr3 (7-258)||(20344685-20344943)
chr3 (19-162)||(5526910-5527053)
chr3 (7-161)||(5491260-5491414)
chr3 (7-162)||(5504055-5504210)
chr3 (7-306)||(5826874-5827167)
chr3 (7-358)||(5456074-5456406)
chr3 (686-804)||(5852408-5852526)
chr3 (7-204)||(5447512-5447700)
chr3 (316-382)||(5447802-5447867)


Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 7 - 622
Target Start/End: Complemental strand, 5853212 - 5852590
Alignment:
Q  7 aagtattggcgctgtgaatctccaaagttgaaaaatcctgcttcaaaccttccagctccagaaacaagtgtatcaccgaattgcataaactgatctggag 106  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| ||||  ||||| |||||||||| ||||||||||||||||||||||||| |||||    
T  5853212 aagtattggcgttgtgaatcgccaaagttgaaaaatcctgcttcatacctctcagctgcagaaacaagagtatcaccgaattgcataaactgatttggag 5853113  T
Q  107 caatagtagtaaaagtgttctgtttagataaagtgggcatggagcaaaataagaaagtgcaaacaattagcattgacaccttagtatggttctccattgt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  5853112 caatagtagtaaaagtgttctgtttagataaagtgggcatggagcaaaataaaaaagtgcaaacaattagcattggcaccttagtatggttctccattgt 5853013  T
Q  207 gtttgt----------ttgttttgtcctaatcattttcattatatcaaattccatattcaattgacatggcttaggtgtctaagtcttcccgtttgcgtg 296  Q
    ||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||| |||||||||    
T  5853012 gtttgtgttggtttgtttgttttgtcctaatcattttcattatatcaaattccatattcaattgacatggcttagtcgtctaagtcgtcctgtttgcgtg 5852913  T
Q  297 ctaattgatgcaatttttcaaacaaaa-tcaacaagtttgtggtgcataatctagtctactcaacctaaaaacttggcatgttgaccaagacttctagct 395  Q
    |||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||    
T  5852912 ctaattgatgcaatttttcaaaaaaaaatcaacaagtttatggtgcataatctagtctactcaacttaaag--ttggcatgttgaccaagacttctagct 5852815  T
Q  396 ttgcgtgtaacatggatgatggaaaaaggaatgctgtcaaatatataaatgtcaagaagcatagacttaattgattcaaaatatcagtttagagaaagga 495  Q
    || ||||||||||||||||||||||| ||||||||| ||||||| | ||||||||||||||||  ||||||||||||||||||||| ||||||||||| |    
T  5852814 ttccgtgtaacatggatgatggaaaagggaatgctgccaaatatgtgaatgtcaagaagcata--cttaattgattcaaaatatcaatttagagaaagaa 5852717  T
Q  496 aattactcactccatatcattttaaatgtcctatattgaaaatgtgtactgttcaccatcacataccatgctttgacccgatttttctactaatatataa 595  Q
    ||| |||||||| || |||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5852716 aatcactcactcaatgtcattttaaatgacccatattgaaaatgtgtactgttcacaatcacataccatgctttgacccgatttttctactaatatataa 5852617  T
Q  596 atatataagatattgttggattcatct 622  Q
    | |||||||||||||||||||| ||||    
T  5852616 agatataagatattgttggatttatct 5852590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 5847905 - 5847642
Alignment:
Q  7 aagtattggcgctgtgaatctccaaagttgaaaaatcctgcttcaaaccttccagctccagaaacaagtgtatcaccgaattgcataaactgatctggag 106  Q
    ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |    
T  5847905 aagtattggcgttgtggatctccaaagtagaaaaatcctgcttcaaaccttccagttccagaaacaagtgtatcaccgaattgcataaactgatttgggg 5847806  T
Q  107 caatagtagtaaaagtgttctgtttagataaagtgggcatggagcaaaataagaaagtgcaaacaattagcattgacaccttagtatggttctccattgt 206  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||  |||||||  | || |||||||||  || |||| ||||||| ||||||||    
T  5847805 caatagtagtaaaagtgttctgtttagagaaagtgggcattaagcaaaaggagaaagtagacaccattagcattagcatcttattatggttttccattgt 5847706  T
Q  207 gtttgtttgttttgtcctaatcattttcattatatcaaattccatattcaattgacatggcttag 271  Q
    ||||||||  |||||||| |||||||||||| |||||||||  | |||||| |||||||||||||    
T  5847705 gtttgttt-atttgtcctcatcattttcattttatcaaatttaaaattcaaatgacatggcttag 5847642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 5485851 - 5485996
Alignment:
Q  19 tgtgaatctccaaagttgaaaaatcctgcttcaaaccttccagctccagaaacaagtgtatcaccgaattgcataaactgatctggagcaatagtagtaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||| ||||||||||| |||||    
T  5485851 tgtgaatcgccaaagttgaaaaatcctgcttcaaaccttccagctgcagagacaagcgtatcaccgaattgcataaattgatttggagcaatagcagtaa 5485950  T
Q  119 aagtgttctgtttagataaagtgggcatggagcaaaataagaaagt 164  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||    
T  5485951 aagtgttctgtgtagacaaagtgggcatggagcaaaataagaaagt 5485996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 5801508 - 5801277
Alignment:
Q  7 aagtattggcgctgtgaatctccaaagttgaaaaatcctgcttcaaaccttccagctccagaaacaagtgtatcaccgaattgcataaactgatctggag 106  Q
    ||||||||||| || ||||| ||||||||||||||||| |||||| || |||||||| |||||||||| ||||||||| ||||||||||||||| |||||    
T  5801508 aagtattggcgttgggaatcgccaaagttgaaaaatccggcttcatacattccagctgcagaaacaagagtatcaccgtattgcataaactgatttggag 5801409  T
Q  107 caatagtagtaaaagtgttctgtttagataaagtgggcatggagcaaaataagaaagtgcaaacaattagcattgacaccttagtatggttctccattgt 206  Q
    ||||||||||||||  ||| ||| |||| |||||||||||||||||||| |||||||   | || |||||||||  | ||||  ||| ||||||||||||    
T  5801408 caatagtagtaaaatagttttgtctagagaaagtgggcatggagcaaaagaagaaagaaaacaccattagcattagccccttgttattgttctccattgt 5801309  T
Q  207 gtttgt-ttgttttgtcctaatcattttcatt 237  Q
    |||||| ||| ||||| || ||||||||||||    
T  5801308 gtttgtgttggtttgttctcatcattttcatt 5801277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 20344685 - 20344943
Alignment:
Q  7 aagtattggcgctgtgaatctccaaagttgaaaaatcctgcttcaaaccttccagctccagaaacaagtgtatcaccgaattgcataaactgatctggag 106  Q
    |||||||||||  ||| ||||| |||||||||||||||||||||||||  |||| ||||||||||||||||||||| | ||||||||||||||| || ||    
T  20344685 aagtattggcgtagtggatctctaaagttgaaaaatcctgcttcaaacaatccatctccagaaacaagtgtatcactgtattgcataaactgatttgaag 20344784  T
Q  107 caatagtagtaaaagtgttctgtttagataaagtgggcatgg------agcaaaataagaaagtgcaaacaattagcattgacaccttagtatggttctc 200  Q
    |||| ||||||| ||| || ||||||||  ||||||||||||      ||||||| ||||||||  | || |||||||||  ||||||| ||||||||||    
T  20344785 caatggtagtaagagttttatgtttagagtaagtgggcatggccatgaagcaaaagaagaaagtaaacaccattagcattagcaccttattatggttctc 20344884  T
Q  201 cattgtgtttgt-ttgttttgtcctaatcattttcattatatcaaattccatattcaat 258  Q
    |||||||||||| | | ||||||||  | ||||||||| |||||||||||| |||||||    
T  20344885 cattgtgtttgtgtcgatttgtcctcgttattttcattttatcaaattccaaattcaat 20344943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 5526910 - 5527053
Alignment:
Q  19 tgtgaatctccaaagttgaaaaatcctgcttcaaaccttccagctccagaaacaagtgtatcaccgaattgcataaactgatctggagcaatagtagtaa 118  Q
    |||| |||||||||||||||||| ||||||||| || | |||||| |||||||||| |||||||| |||||||||||||||| |||||||||||||||||    
T  5526910 tgtggatctccaaagttgaaaaaacctgcttcatacatcccagctgcagaaacaagagtatcaccaaattgcataaactgatttggagcaatagtagtaa 5527009  T
Q  119 aagtgttctgtttagataaagtgggcatggagcaaaataagaaa 162  Q
    |||| |||||| |||||||| |||||||||||||||| ||||||    
T  5527010 aagttttctgtgtagataaattgggcatggagcaaaagaagaaa 5527053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 5491260 - 5491414
Alignment:
Q  7 aagtattggcgctgtgaatctccaaagttgaaaaatcctgcttcaaaccttccagctccagaaacaagtgtatcaccgaattgcataaactgatctggag 106  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| ||||  ||||| |||||||||| ||||||||| ||||||||||||||| |||||    
T  5491260 aagtattggcgttgtgaatcgccaaagttgaaaaatcctgcttcatacctctcagctgcagaaacaagagtatcaccgtattgcataaactgatttggag 5491359  T
Q  107 caatagtagtaaaagtgttctgtttagataaagtgggcatggagcaaaataagaa 161  Q
    |||||||||||||||| |||||| |||| |||||  |||||||| |||| |||||    
T  5491360 caatagtagtaaaagttttctgtgtagagaaagttagcatggaggaaaagaagaa 5491414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 5504055 - 5504210
Alignment:
Q  7 aagtattggcgctgtgaatctccaaagttgaaaaatcctgcttcaaaccttccagctccagaaacaagtgtatcaccgaattgcataaactgatctggag 106  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| || |||||||| |||||||||| ||||||||| |||||||||| |||| |||||    
T  5504055 aagtattggcgttgtgaatcaccaaagttgaaaaatcctgcttcatacattccagctgcagaaacaagagtatcaccgtattgcataaattgatttggag 5504154  T
Q  107 caatagtagtaaaagtgttctgtttagataaagtgggcatggagcaaaataagaaa 162  Q
    | ||||||||||| || |||||  |||| ||| |||||||||||||||| ||||||    
T  5504155 ctatagtagtaaaggttttctgcgtagagaaattgggcatggagcaaaagaagaaa 5504210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 5827167 - 5826874
Alignment:
Q  7 aagtattggcgctgtgaatctccaaagttgaaaaatcctgcttcaaaccttccagctccagaaacaagtgtatcaccgaattgcataaactgatctggag 106  Q
    |||||||| ||||||||||| |||||||||||||||||||||||| || ||||||||  ||||||||| || |||    ||||||||||||||| |||      
T  5827167 aagtattgacgctgtgaatcgccaaagttgaaaaatcctgcttcatacattccagctgaagaaacaagggtttcatgatattgcataaactgatttgg-- 5827070  T
Q  107 caatagtagtaaaagtgttctgtttagataaagtgggcatggagcaaaataagaaagtgcaaacaattagcattgacaccttagtatggttctccattgt 206  Q
           ||||| ||||||||||||||||||||||||| || |||||| ||||||||| || || ||||| |||  ||||||| |||| || | ||||||    
T  5827069 -------agtaagagtgttctgtttagataaagtgggcttgaagcaaagtaagaaagtacacaccattagaattagcaccttattatgctttttcattgt 5826977  T
Q  207 gtttgtttg------ttttgtcctaatcattttcattatatcaaattccatattcaattgacatggcttaggtgtctaagtcttcccgtttgcgtgctaa 300  Q
    |||||||||      ||||||| | || ||||||||| |||||||||||| |||||| ||| ||| ||||   ||| |||| ||||| | ||||||||||    
T  5826976 gtttgtttgtgtttattttgtcatcataattttcattttatcaaattccaaattcaactgagatgactta---gtccaagtattcccatgtgcgtgctaa 5826880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 7 - 358
Target Start/End: Original strand, 5456074 - 5456406
Alignment:
Q  7 aagtattggcgctgtgaatctccaaagttgaaaaatcctgcttcaaaccttccagctccagaaacaagtgtatcaccgaattgcataaactgatctggag 106  Q
    ||||||||||| |||| ||||||||| |||||||| |||||||||||  |||||||  |||||||||| || |||    |||| |||||| ||| ||| |    
T  5456074 aagtattggcgttgtggatctccaaaattgaaaaaacctgcttcaaaggttccagcagcagaaacaagggtttcattatattggataaacagatttggtg 5456173  T
Q  107 caatagtagtaaaagtgttctgtttagataaagtgggcatggagcaaaataagaaagtgcaaacaattagcattgacaccttagtatggttctccattgt 206  Q
             ||| ||||||| ||||||| |||||||||||| |||||||||||||||| || || |||||||||  || |||| |||| |||||||||||    
T  5456174 ---------taagagtgttcagtttagagaaagtgggcatgaagcaaaataagaaagtacacaccattagcattatcagcttattatgcttctccattgt 5456264  T
Q  207 gtttgtttg-ttttgtcctaatcattttcattatatcaaattccatattcaattgacatggcttaggtgtctaagtcttcccgtttgcgtgctaattgat 305  Q
    ||||||  |  |||||| | ||||||||| || ||| |||||||       ||||| | | ||||   ||| |||| ||||  ||||| ||||||||| |    
T  5456265 gtttgtgggagtttgtcttcatcattttccttttatgaaattcc-------attgagaagactta---gtccaagtattcctatttgcatgctaattgtt 5456354  T
Q  306 gcaatttttcaaacaaaatcaacaagtttgtggtgcataatctagtctactca 358  Q
    ||||  || |||||||||||||||||||||||||| ||||||||| |||||||    
T  5456355 gcaa-attccaaacaaaatcaacaagtttgtggtgtataatctagcctactca 5456406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 686 - 804
Target Start/End: Complemental strand, 5852526 - 5852408
Alignment:
Q  686 aagatcaaaattgtacattgacatacatgatagtgtcaactgtcacataatatgagatgaagggagtnnnnnnnnnnnntctggaagttaataagttgga 785  Q
    |||||||||||| || |||||||||| ||||| |||||| ||||||||||||||||| |||||||||            |||||| ||||||||||||||    
T  5852526 aagatcaaaattataaattgacatacgtgatattgtcaattgtcacataatatgagacgaagggagtaaaaaacaaaaatctggaggttaataagttgga 5852427  T
Q  786 tataaatattactaaaaaa 804  Q
    || ||||||||||||||||    
T  5852426 tagaaatattactaaaaaa 5852408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 5447512 - 5447700
Alignment:
Q  7 aagtattggcgctgtgaatctccaaagttgaaaaatcctgcttcaaaccttccagctccagaaacaagtgtatcaccgaattgcataaactgatctggag 106  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||||  |||||    |||||||||| || |||    |||| ||| |||||| |||||    
T  5447512 aagtattggcgttgtggatctccaaaattgaaaaatcctgcttcaaaggttccaatagcagaaacaagggtttcattatattggatatactgatttggag 5447611  T
Q  107 caatagtagtaaaagtgttctgtttagataaagtgggcatggagcaaaataagaaagtgcaaacaattagcattgacaccttagtatggttctccatt 204  Q
             ||| ||| ||| |||||||||||| |||||||||| ||||||||||||| || || |||||||||  |||| || ||||||||| ||||    
T  5447612 ---------taagagttttcagtttagataaagcgggcatggaggaaaataagaaagtacacactattagcattagcaccatattatggttctgcatt 5447700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 5447802 - 5447867
Alignment:
Q  316 aaacaaaatcaacaagtttgtggtgcataatctagtctactcaacctaaaaacttggcatgttgacc 382  Q
    ||||||||||||||||||||||||| ||||||||| ||| || |||| ||| |||||||||||||||    
T  5447802 aaacaaaatcaacaagtttgtggtgtataatctagcctaatc-accttaaatcttggcatgttgacc 5447867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3607 times since January 2019
Visitors: 4816