View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0737D-Insertion-12 (Length: 694)
Name: NF0737D-Insertion-12
Description: NF0737D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737D-Insertion-12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 8 - 689
Target Start/End: Complemental strand, 2111855 - 2111154
Alignment:
| Q |
8 |
cattaggtagcaagtattgttatttggtatagttgtaatttatggcttttgttctattgtattggtaggtagagtaaagcttgcacttcacccccactat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2111855 |
cattaggtagcaagtattgttatttggtatagttgtaatttatggcttttgttctattgtattggtaggtagagtaaagcttgcacttcacccccactat |
2111756 |
T |
|
| Q |
108 |
taaaaagtgtaccttataatgcttattaaaatttctaaaaataataagggatacannnnnnnnnnnngttgacaaaataaggtacacatttgaatcatat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
2111755 |
taaaaagtgtaccttataatgcttattaaaatttctaaaaataataagggatacattttttttttt-gttgacaaaataaggtacacatttgaataatat |
2111657 |
T |
|
| Q |
208 |
tcatattagacacccattataagtctatcacctctatcttataggagtatgtatatctatatcgttggttttgcaagttgccaaacaggatctggcaaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2111656 |
tcatattagacacccattataagtctatcacctctatcttataggagtatgtatatctatatcgttggttttgcaagttgccaaacaggatctggcaaat |
2111557 |
T |
|
| Q |
308 |
gcaagaaatcgaaaaacacaagaaagaaagaatcaaacatcgtacacgtgatgaacaggcaatttgtggaaagactgcctctcagactaaccacagatat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2111556 |
gcaagaaatcgaaaaacacaagaaagaaagaatcaaacatcgtacacgtgatgaacaggcaatttgtggaaagactgcctctcagactaaccacagatat |
2111457 |
T |
|
| Q |
408 |
aattatgtcctttcatattcggtaacatttctaaaattggaaatatcttctccatactcatatttctatttatatcacaaaatccattcgtatcactttt |
507 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2111456 |
aattatgttctttcatattcggtaacatttctaaaattggaaatatcttctccatactcatatttctatttatatcacaaaatccattcttatcactttt |
2111357 |
T |
|
| Q |
508 |
attgc-------------nnnnnnnnnatgtatgatttttattgcttaaaatcaacgtgagttc---------atgtgaaaattacgtgtaaagtgtgag |
585 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2111356 |
attgctttttttattttttatttttttatgtatgacttttattgctt-aaatcaacgtgagttctatcactttatgtgaaaattacgtgtaaagtgtgag |
2111258 |
T |
|
| Q |
586 |
actcgcgttatttttactcaattnnnnnnnnnntgttagagattgggttcttaaaacgactaccaaaatttcttttgattaataataatggacaaaaatt |
685 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| || |||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2111257 |
actcacgttatttttactcaattaaaaaaaaaatgttagagagtgtgttcttaaaatgactatcaaaatttattttgattaataataatggacaaaaatt |
2111158 |
T |
|
| Q |
686 |
gttt |
689 |
Q |
| |
|
|||| |
|
|
| T |
2111157 |
gttt |
2111154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3304 times since January 2019
Visitors: 4812