View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737D-Insertion-14 (Length: 663)
Name: NF0737D-Insertion-14
Description: NF0737D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737D-Insertion-14 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 45146236 - 45146619
Alignment:
| Q |
8 |
ccactcgtgttgctctaaatgaaatacgatatgattacataaatcaagacaaaagtttctatcaagcagattgtagtttgatattagtaatcaattgttg |
107 |
Q |
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| T |
45146236 |
ccactcgtgttgctctaaatgaaatacgatatgattacataaaccaagacaaaagtttctatcaagcagattgtagtttgatattagtaatcaattgttg |
45146335 |
T |
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| Q |
108 |
agattatggatgttttgtaaccttttgctaatacattcaatgatgttttgtagtatgaatttcaatggatgggaaggcatgatcttcattggagtaaatg |
207 |
Q |
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| T |
45146336 |
agattatggatgttttgtaaccttttgctaatacattcaatgatgttttgtagtatgaatttcaatggatgggaaggcatgatcttcattggagtaaatg |
45146435 |
T |
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| Q |
208 |
cagctataaggtatgcagccgaaagttatgtcttactgttgttagctgttctaatttatgattgatgaaattccaaggtacctagatgctaagttccttg |
307 |
Q |
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| T |
45146436 |
cagctataaggtatgcagccgaaagttatgtcttactgttgttagttgttccaatttatgattgatgaaattccaaggtacctagatgctaagttccttg |
45146535 |
T |
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| Q |
308 |
ttatgagtctgatcatgttatgtttcacttgttaaatatgtataacaaccttgcattattagcatttgaagcatattgatatag |
391 |
Q |
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| T |
45146536 |
ttatgagtctgatcatgttatgtttcacttgttaaatatgtataacaactttgcattattagcatttgaagcatattgatatag |
45146619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 457 - 663
Target Start/End: Original strand, 45146686 - 45146892
Alignment:
| Q |
457 |
ccaacgaactcggacttcgacatccaagagctgccaaatactctgtctatgtgacagtctttcaatcgcttttcatgggaatattcttcatgggtgtaat |
556 |
Q |
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| T |
45146686 |
ccaacgaactcggacttcgacatccaagagctgccaaatactctgtctatgtgacagtctttcaatctcttttcatgggaatattcttcatgggtgtaat |
45146785 |
T |
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| Q |
557 |
tttggtaactaaagactattttcacattgtttttaccaatagtaagactttgcaagtggcggttgcagatctgggaaacctccttgccgtgacaatggtt |
656 |
Q |
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| T |
45146786 |
tttggtaactaaagactattttgccattgtttttaccaatagtaagactttgcaagtggcggttgcagatctgggaaacctccttgccgtgacaatggtt |
45146885 |
T |
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| Q |
657 |
ctaaaca |
663 |
Q |
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||||||| |
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| T |
45146886 |
ctaaaca |
45146892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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