View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737D-Insertion-16 (Length: 738)
Name: NF0737D-Insertion-16
Description: NF0737D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737D-Insertion-16 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 7 - 640
Target Start/End: Complemental strand, 33581942 - 33581281
Alignment:
| Q |
7 |
atggtggaagtcaaaactcgtcttcgaatcgccacaatccttcttcatcattcccattacgctgtgttagtatcttcctcctcaaacccttgttccaaaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33581942 |
atggtggaagtcaaaactcgtcttcgaatcgccacaatccttcttcatcattcccattacgctgtgttagtatcttcctcctcaaacccttgttccaaaa |
33581843 |
T |
|
| Q |
107 |
caatttgttgcttgtttaatgatgnnnnnnnnnnnnnnn----gtagtaattattgttgaaggctataccgtcttgttttgagttgaagtgttatcatct |
202 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33581842 |
caatttgttgcttgtttaatgatgtttttttttttttttttttgtagtaattattgttgaaggctataccgtcttgttttgagttgaagtgttatcatct |
33581743 |
T |
|
| Q |
203 |
tgttggaattggaggagctggttcaaaccatggtgagggagaaaaatactagcctaacaactaaatactaacatctcccgtttatnnnnnnntgtccctt |
302 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |
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| T |
33581742 |
tgttggaattggaggacctggttcaaaccatggtgagggagaaaaatactagcctaacaactaaatactaacatcgcccttttataaaaaaatgtccctt |
33581643 |
T |
|
| Q |
303 |
cctaatcnnnnnnnnnnnnnnnnnacaca----ttaactaaccataactgccacgctttttaactgaggtctgcta---ctg-agagctatagattgtaa |
394 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |
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| T |
33581642 |
cctaatcccctctctctctctcacacacacacattaactaaccataactgccacgctttttaactgaggtctgctagcacagtagagctatagattgtaa |
33581543 |
T |
|
| Q |
395 |
atgatagttgtatgctccagtgtgtgtgt------------aaaaacagtagtaaattgtaactttcacaccaagtgtaaactgtaaaggaaatgtttgc |
482 |
Q |
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| T |
33581542 |
atgatagttgtatgctctagtgtgtgtgtgtgtgtgtgtgtaaaaacagtagtaaattgtaactttcacaccaagtgtaaactgtaaaggaaatgtttgc |
33581443 |
T |
|
| Q |
483 |
cgtttttgttttaccatatcttataccatttatgcttttccctcttttcacatatttgtaccattggtctcatactactaaatatcaaaacatgtata-- |
580 |
Q |
| |
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| T |
33581442 |
cgtttttgttttaccatatcttataccatttatgcttttccctcttttcacatatttgtaccattggtctcatactactaaatatcaaaacatgtatacc |
33581343 |
T |
|
| Q |
581 |
--cctatacagctatacctacatttcctgcctgaaaatcatcttttacttttttcacatgag |
640 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
33581342 |
tacctatacagctatacctacatttcctgcctgaaaatcaccttttactttttccacatgag |
33581281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 577 - 684
Target Start/End: Complemental strand, 32356774 - 32356666
Alignment:
| Q |
577 |
tatacctatacagctatacctacatttcctgcctgaaaatcatcttttacttttttcacatgagtattcatgtctgataatatatatgtc-aaggttttt |
675 |
Q |
| |
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||||||||||||||| ||||||||||| | || ||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||||| || |
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| T |
32356774 |
tatacctatacagctttacctacattttcagcttgaaaatcaccttttactttttccacatgagtattcgtgtctgataatatatatgtcaaaggtgttc |
32356675 |
T |
|
| Q |
676 |
aatatatga |
684 |
Q |
| |
|
||||||||| |
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|
| T |
32356674 |
aatatatga |
32356666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 32359244 - 32359188
Alignment:
| Q |
13 |
gaagtcaaaactcgtcttcgaatcgccacaatccttcttcatcattcccattacgct |
69 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |
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| T |
32359244 |
gaagtcaaaactcgtcttcgtatcgccacaatccttcttcatcattctcataacgct |
32359188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 32359082 - 32359038
Alignment:
| Q |
146 |
gtagtaattattgttgaaggctataccgtcttgttttgagttgaa |
190 |
Q |
| |
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|||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
32359082 |
gtagcaattgttgttgaaggctataccgtcttgttttgagttgaa |
32359038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 542
Target Start/End: Complemental strand, 17970013 - 17969902
Alignment:
| Q |
436 |
aaattgtaactttcacacca-agtgtaaactgtaaaggaaatgtttgccgtttttgttttaccat----atcttataccatttatgcttttccctctttt |
530 |
Q |
| |
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||||||||||||| ||||| |||| ||| |||||||| ||||||||| |||||| |||| | | |||||||| ||||||||||||||||||||| |
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| T |
17970013 |
aaattgtaacttttacacccgagtgaaaattgtaaaggtaatgtttgctgtttttttttttctcttaaaatcttatataatttatgcttttccctctttt |
17969914 |
T |
|
| Q |
531 |
cacatatttgta |
542 |
Q |
| |
|
|||| ||||||| |
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| T |
17969913 |
cacacatttgta |
17969902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 17923851 - 17923802
Alignment:
| Q |
13 |
gaagtcaaaactcgtcttcgaatcgccacaatccttcttcatcattccca |
62 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||||| |||||||| |
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|
| T |
17923851 |
gaagtcaaaactcgtcttcgtattgccactatccttcttcaccattccca |
17923802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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