View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737D-Insertion-17 (Length: 842)
Name: NF0737D-Insertion-17
Description: NF0737D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737D-Insertion-17 |
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Alignment Details
Target: chr3 (Bit Score: 666; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 7 - 782
Target Start/End: Original strand, 30781120 - 30781880
Alignment:
| Q |
7 |
atgaactacatgttccttttcacacttctatgttgttatgtgataacctcaatgtcgctctactttcttatgatccagttttgcatgcttgtacaaagca |
106 |
Q |
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| T |
30781120 |
atgaactacatgttccttttcacacttctatgttgttatgtgataacctcaatgtcgctctactttcttatgatccagttttgcatgcttgtacaaagca |
30781219 |
T |
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| Q |
107 |
catagaattggacattcattttgtctagaaatagggattgtctaaatctgtagttgtccttcatgtgtatgtcgttgaccaacatccgaattcattcaca |
206 |
Q |
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| T |
30781220 |
catagaattggacattcattttgtctagaaatagggattgtctaaatctgtagttgtccttcatgtgtatgtcgttgaccaacatccgaattcattcaca |
30781319 |
T |
|
| Q |
207 |
cgtcaccaccatcaactcgatttaaagagcttcgcaccaaactcaatgtgtttacctttctgcaaccaccttgactctgagaggggatatcaaagtatgt |
306 |
Q |
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| T |
30781320 |
cgtcaccaccatcaactcgatttaaagagcttcgcaccaaactcaatgtgtttacctttctgcaaccaccttgactctgagaggggatatcaaagtatgt |
30781419 |
T |
|
| Q |
307 |
tatgaagagcaccagtgccttgcactaattgaaacggttattcagttatatgacaattagtcattagttagggtcttaactgtaatgacttctatctata |
406 |
Q |
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| T |
30781420 |
tatgaagagcaccagtgccttgcactaattgaaacggttattcagttatatgacaattagtcattagttagggtcttaactgtaatgacttctatctaca |
30781519 |
T |
|
| Q |
407 |
gcaatgatgtaaaaacaacttcagagtaatgaaatctttgcttcatttttgtcttccagttaccctcttcctctctacatctcatgcttcactaccttcg |
506 |
Q |
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| T |
30781520 |
gcaatgatgt---aagaacttcagagtaatgaaatctttgcttcatttttgtcttccagttaccctcttc--ctctacatctcatgcttcactaccttcg |
30781614 |
T |
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| Q |
507 |
atgagataggttttggtccaatttattcctagcagtaaacctgaagacctattattaaaatgcaaattttaacgatgcatagtttgtgaattggattttt |
606 |
Q |
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| T |
30781615 |
atgagataggttttggtccaacttattcctagcagtaaacctgaagacctattattaaaatgcaaattttaacgatgcatagtttgtgaattggattttt |
30781714 |
T |
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| Q |
607 |
cattatagtaagcatggaataatcataagcaataatcataaattaggcgattagtgactnnnnnnntaacaaatcaccagaagggatgaatatgttaaga |
706 |
Q |
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| T |
30781715 |
cattatagt--------aataagcat--ggaataatcataaattaggcgattagtgactaaaaaaataacaaatcaccagaagggatgaatatgttaaga |
30781804 |
T |
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| Q |
707 |
atcaaagaataatttatgacacctaatatacaacaaaatatttgctttgagaatgtcagctttgacgtggtataca |
782 |
Q |
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| T |
30781805 |
atcaaagaataatttatgacacctaatatacaacaaaatatttgctttgagaatgtcagctttgacgtgatataca |
30781880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 569 - 842
Target Start/End: Original strand, 30781879 - 30782144
Alignment:
| Q |
569 |
caaattttaacgatgcatagtttgtgaattggatttttcattatagtaagcatggaataatcataagcaataatcataaattaggcgattagtgactnnn |
668 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||||||||||||||||||||||| |
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| T |
30781879 |
caaattttaacgatgcatagtttgtgaattggatttttcattatagtaa--------taagcat--ggaataatcataaattaggcgattagtgactaaa |
30781968 |
T |
|
| Q |
669 |
nnnntaacaaatcaccagaagggatgaatatgttaagaatcaaagaataatttatgacacctaatatacaacaaaatatttgctttgagaatgtcagctt |
768 |
Q |
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| T |
30781969 |
aaaataacaaatcaccagaagggatgaatatgttaagaatcaaagaataatttatgacacctaatatacaacaaaatatttgctttgagaatgtcagctt |
30782068 |
T |
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| Q |
769 |
tgacgtggtatacattatatttgactttattgaaagtgttcagtttaataagt--caaagttacggtttgattatc |
842 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| |
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| T |
30782069 |
tgacgtgatatacattatatttgactttattgaaagtgttcattttaataaattcaaaagttacggtttgattatc |
30782144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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